Overview Annotation GWAS Evidence Associated genes

P06345

Metabolite ID
P06345
Deionized mass
251.1169 Da
Average m/z
252.1244
Average RT
9.0016
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
154
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

154 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G148300 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 6Chr08:11312041–11345534 (-)3.149e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 5Chr08:11253074–11256505 (+)6.887e-16
Glyma.08G147800 hypothetical protein NA 4Chr08:11266659–11274890 (+)3.149e-11
Glyma.08G147300 hypothetical protein NA 3Chr08:11238871–11242682 (+)2.428e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)5.023e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.686e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.53e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)4.272e-15
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 2Chr05:41022747–41030067 (-)3.029e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.986e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.856e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.05e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.05e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)9.894e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.769e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.215e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)3.521e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.704e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)5.142e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)5.142e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)5.142e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)5.142e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)5.142e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)5.142e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)5.142e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.643e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.106e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.499e-11
Glyma.03G041500 hypothetical protein NA 1Chr03:5249601–5251509 (-)5.706e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.749e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.605e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.728e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.746e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.903e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.086e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.644e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.03e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.303e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.272e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.866e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.721e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.721e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.721e-16
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)3.943e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.657e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.084e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)4.042e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)3.029e-13
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)3.029e-13
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)3.029e-13
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)5.919e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.17e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.13e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.872e-17
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.57e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.57e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.57e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.22e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.22e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.916e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.007e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.007e-14
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.311e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)8.795e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.498e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)8.795e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)8.796e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.498e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.862e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)1.243e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)6.716e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)5.218e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)4.415e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)4.415e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)3.115e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)3.115e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)4.415e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.701e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.072e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)2.806e-13
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.894e-12
Glyma.08G147900 hypothetical protein AT5G09760:AT5G09760:Plant invertase/pectin methylesterase inhibitor superfamily 1Chr08:11278955–11281587 (-)3.812e-11
Glyma.08G148100 hypothetical protein AT1G78570:RHM1:rhamnose biosynthesis 1 1Chr08:11291040–11298606 (-)3.149e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.325e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.325e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.398e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)4.957e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)4.957e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.495e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.616e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.186e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.62e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.477e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.477e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.477e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.477e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.89e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.084e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.026e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.026e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.026e-11
Glyma.12G095500 hypothetical protein AT3G44150:AT3G44150:Expp1 protein 1Chr12:8023570–8027770 (-)2.935e-11
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)1.172e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.036e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.036e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.994e-18
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.994e-18
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.623e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.623e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.492e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.492e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.856e-15
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.658e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.657e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.05e-14
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.459e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.459e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.459e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.049e-14
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)4.713e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)7.996e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)8.346e-14
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)8.346e-14
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.906e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)3.848e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.065e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.567e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.065e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.065e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.749e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.472e-18
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.239e-14
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.303e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.894e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.708e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.53e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.53e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.677e-16
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.465e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.622e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.346e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.128e-13
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.582e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.358e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.358e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)7.815e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.06e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)4.521e-12
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)7.573e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.912e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.768e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.768e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.188e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.019e-11