Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05960

Metabolite ID
P05960
Deionized mass
559.1606 Da
Average m/z
560.1669
Average RT
8.8640
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
132
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

132 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.365e-12
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)2.065e-13
Glyma.07G004300 hypothetical protein AT3G21180:ACA9:autoinhibited Ca(2+)-ATPase 9 3Chr07:316198–335104 (-)1.993e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.284e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.531e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.955e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.048e-13
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 2Chr03:4472672–4477787 (-)4.348e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)4.704e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)1.748e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.979e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)7.727e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.727e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.643e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.643e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.676e-12
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)4.152e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.365e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.216e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.118e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)6.062e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)5.263e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)1.82e-13
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)1.43e-12
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)1.146e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.676e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.014e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.78e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.283e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.135e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.135e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.59e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.503e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.503e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.503e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)9.246e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.556e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.074e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)6.388e-16
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.132e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.336e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.618e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.041e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.041e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)4.694e-12
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)2.579e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)7.992e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.099e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.099e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.099e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.934e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.897e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.897e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.99e-11
Glyma.07G004200 hypothetical protein AT3G21190:MSR1:O-fucosyltransferase family protein 1Chr07:310152–314089 (+)3.356e-11
Glyma.07G007100 hypothetical protein NA 1Chr07:529398–533680 (+)2.458e-12
Glyma.07G007300 hypothetical protein NA 1Chr07:541990–545244 (-)2.808e-11
Glyma.07G007400 hypothetical protein AT1G54270:EIF4A-2:eif4a-2__AT3G13920:EIF4A1:eukaryotic translation initiation factor 4A1__AT1G72730:AT1G72730:DEA(D/H)-… 1Chr07:549904–553210 (+)2.458e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.358e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.195e-14
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.195e-14
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.438e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.917e-15
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.334e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.062e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.727e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.727e-14
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.255e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.727e-14
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)7.095e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)6.752e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.312e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.714e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.82e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.417e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.28e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.152e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.754e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.403e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.403e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.403e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.403e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.389e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)9.86e-11
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)2.26e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.082e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.082e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.082e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)7.793e-11
Glyma.11G236800 hypothetical protein AT5G09360:LAC14:laccase 14 1Chr11:33157016–33161441 (+)5.413e-11
Glyma.11G237100 hypothetical protein NA 1Chr11:33172417–33173178 (+)5.413e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)7.402e-12
Glyma.11G238100 hypothetical protein AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:33261569–33264662 (+)6.538e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)1.826e-13
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)2.13e-12
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)2.13e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.033e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.033e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.924e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.829e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.829e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.219e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.284e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.59e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.015e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.015e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.643e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.731e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)9.409e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.664e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.664e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.664e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.583e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.72e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)9.187e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.183e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)9.229e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.346e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.948e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.955e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.955e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.812e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.791e-13
Glyma.16G172600 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33333664–33344521 (-)1.213e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)1.934e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.452e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.452e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)2.962e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)2.962e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)2.962e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)2.783e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)9.251e-12