Overview Annotation GWAS Evidence Associated genes

P05656

Metabolite ID
P05656
Deionized mass
289.1577 Da
Average m/z
290.1655
Average RT
8.8003
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
157
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

157 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)8.527e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.904e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)1.148e-13
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)2.906e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)8.576e-11
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)7.959e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)2.906e-13
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)5.914e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)1.742e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)1.975e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)9.035e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.035e-16
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.533e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.532e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.533e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.037e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.75e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.797e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.68e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.348e-16
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.715e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.032e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.904e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.912e-11
Glyma.01G030500 hypothetical protein NA 1Chr01:3189212–3200277 (+)5.029e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)8.596e-11
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)4.224e-11
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)4.505e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)2.569e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)5.914e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.717e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.422e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)6.866e-11
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)8.906e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)3.977e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)3.977e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)7.301e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)7.301e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)7.301e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.681e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.784e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.765e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.224e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.772e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.554e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.554e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.18e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.917e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.917e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.917e-15
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.067e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.199e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.891e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.726e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.375e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.986e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.325e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.325e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.325e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.567e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.567e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.363e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)5.111e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)5.111e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.139e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)4.647e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.647e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)8.816e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.035e-16
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.035e-16
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.035e-16
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.074e-15
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.895e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.895e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.535e-16
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)5.754e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.401e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.914e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.933e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.599e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.653e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.533e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.533e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.533e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.533e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.533e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.687e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.687e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.687e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.687e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.149e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.356e-16
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.967e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.637e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.453e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.453e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.453e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.453e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.64e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.165e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.165e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.361e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.377e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.732e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.732e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.48e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.758e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.723e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.723e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.723e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.176e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.605e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.605e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.937e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.68e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.348e-16
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.653e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.11e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.076e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.957e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.957e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.957e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.658e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.471e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)9.36e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.229e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.156e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.048e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.135e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.433e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.252e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.252e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)5.274e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)5.274e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.352e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.352e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)8.575e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)1.2e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.147e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.523e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)1.542e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.254e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)7.087e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.324e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.411e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.753e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.592e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.472e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)8.527e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)3.908e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.036e-14
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.574e-14
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)3.097e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)9.382e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)9.365e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.548e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.844e-12