Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04739

Metabolite ID
P04739
Deionized mass
215.0780 Da
Average m/z
216.0849
Average RT
8.3118
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 3Chr08:11238871–11242682 (+)1.122e-14
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.237e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.423e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.378e-11
Glyma.18G201400 hypothetical protein AT2G38180:AT2G38180:SGNH hydrolase-type esterase superfamily protein 2Chr18:48122342–48125774 (-)5.786e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)5.332e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.964e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.976e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.695e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.488e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)3.776e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)3.776e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)3.776e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)3.776e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)3.776e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)3.776e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)3.776e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.237e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.259e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.259e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)7.872e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.026e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)5.184e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)7.553e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.221e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.409e-12
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)4.901e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)1.865e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.865e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.378e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.378e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.378e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.378e-11
Glyma.08G146100 hypothetical protein NA 1Chr08:11119305–11124078 (+)7.532e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)1.776e-15
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)7.387e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.015e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.116e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.825e-12
Glyma.12G095500 hypothetical protein AT3G44150:AT3G44150:Expp1 protein 1Chr12:8023570–8027770 (-)3.802e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.697e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.697e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.697e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.431e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.629e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.553e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.023e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.077e-16
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.077e-16
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)6.161e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.658e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.347e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.347e-11
Glyma.18G205800 H-1 ferritin light chain AT5G01600:FER1:ferretin 1 1Chr18:48947662–48950635 (-)4.922e-12
Glyma.18G212700 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr18:49942123–49944169 (-)5.355e-11
Glyma.18G212800 hypothetical protein NA 1Chr18:49960776–49964807 (-)9.638e-12
Glyma.18G213700 hypothetical protein NA 1Chr18:50068173–50075808 (-)9.638e-12
Glyma.18G213900 hypothetical protein AT3G08740:AT3G08740:elongation factor P (EF-P) family protein 1Chr18:50082939–50086770 (-)9.638e-12
Glyma.18G214000 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr18:50088148–50092969 (-)9.638e-12
Glyma.18G214400 hypothetical protein NA 1Chr18:50122545–50123993 (-)9.638e-12
Glyma.18G214500 hypothetical protein NA 1Chr18:50125053–50127059 (-)9.638e-12
Glyma.18G214700 hypothetical protein NA 1Chr18:50134581–50139804 (-)9.638e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.668e-11