Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04734

Metabolite ID
P04734
Deionized mass
170.0189 Da
Average m/z
171.0265
Average RT
8.3089
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.69e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.623e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)1.946e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)6.151e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)5.513e-11
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)6.117e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)1.874e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.69e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.363e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.224e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.388e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.714e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.028e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.028e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.938e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.617e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.617e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.617e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.91e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.702e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.623e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)5.376e-11
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)6.983e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.296e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)8.732e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)3.23e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)8.732e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)3.189e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.721e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.112e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.599e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.011e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.073e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.073e-14
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.628e-11
Glyma.14G011900 hypothetical protein AT5G55960:AT5G55960:transmembrane protein C9orf5 protein 1Chr14:902341–905336 (-)2.29e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.143e-11
Glyma.16G105300 hypothetical protein AT4G19120:ERD3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:21299154–21305321 (-)4.683e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.723e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.003e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.513e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.246e-15
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.087e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.712e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)8.928e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.928e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.035e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.078e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.885e-13