Overview Annotation GWAS Evidence Associated genes

P03801

Metabolite ID
P03801
Deionized mass
634.1878 Da
Average m/z
635.1980
Average RT
7.8553
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
147
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

147 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)1.242e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.5e-11
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)5.036e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.591e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.372e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.945e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.507e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)4.131e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)5.036e-13
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)5.036e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.33e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.33e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.33e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.149e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.077e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.125e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.125e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.48e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.852e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)9.675e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.567e-15
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.178e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.069e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)2.378e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.477e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.477e-14
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)2.986e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)4.537e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)9.134e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.686e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.698e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.03e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.888e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.06e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.265e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.596e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.211e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.211e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.141e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.78e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.78e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.78e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)5.645e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.131e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.085e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.707e-15
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)5.965e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.554e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.905e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.554e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.554e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.905e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.507e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.507e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.5e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.5e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.806e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.806e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.135e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.836e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.389e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.036e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.036e-13
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)3.495e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.108e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.059e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.059e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.046e-12
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.657e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.973e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.778e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)7.697e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.931e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)4.404e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.509e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.864e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.33e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.33e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.33e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.624e-14
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.33e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.33e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)7.15e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.384e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.961e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.961e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.961e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.961e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.064e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.147e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.483e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.483e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.25e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.25e-15
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.077e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.598e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.598e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.125e-14
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.599e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.16e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)6.442e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.863e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.863e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.92e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.48e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.812e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.368e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.368e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.809e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.116e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.809e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.809e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.522e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.748e-17
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)6.284e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.496e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)8.594e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)5.224e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.866e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.675e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.628e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.16e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.372e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.372e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.7e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.329e-12
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)3.03e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.509e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.27e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.943e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.726e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)7.772e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.555e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.554e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.945e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.05e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.05e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.166e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.507e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)4.318e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)5.721e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.937e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.937e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.575e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.654e-13
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)7.76e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.242e-11