Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03792

Metabolite ID
P03792
Deionized mass
226.0868 Da
Average m/z
227.0936
Average RT
7.8515
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
142
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

142 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)6.828e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.043e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.848e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)5.515e-14
Glyma.06G098300 hypothetical protein AT5G49680:AT5G49680:SABRE-like protein__AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 2Chr06:7796762–7832753 (-)8.077e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)2.211e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 2Chr06:50586679–50589765 (+)4.51e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.573e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.283e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.4e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.4e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.626e-15
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.653e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.826e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.479e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.802e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)7.942e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.13e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.043e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.209e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.199e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.199e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.465e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.91e-14
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)7.627e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)4.518e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.94e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)8.813e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)4.291e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.754e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.053e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)9.89e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.517e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)7.34e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.95e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.625e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.576e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.576e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.298e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.816e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.816e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.816e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.74e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.989e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.099e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.829e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.336e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.098e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.047e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)3.737e-11
Glyma.06G097800 hypothetical protein AT1G58230:AT1G58230:binding protein 1Chr06:7725465–7766431 (+)8.077e-11
Glyma.06G098200 hypothetical protein NA 1Chr06:7790290–7791746 (+)8.077e-11
Glyma.06G098700 hypothetical protein NA 1Chr06:7851216–7866791 (-)8.077e-11
Glyma.06G098800 hypothetical protein AT1G29060:AT1G29060:Target SNARE coiled-coil domain protein 1Chr06:7869693–7873331 (+)8.077e-11
Glyma.06G098900 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr06:7874852–7879537 (-)8.077e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.145e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.145e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.058e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.735e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.35e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.896e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.896e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)3.025e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)3.025e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.848e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.848e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.956e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.049e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.853e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)3.351e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)3.351e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.699e-16
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.264e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.1e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)5.395e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)7.281e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.232e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.507e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.515e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.308e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.784e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)7.292e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)9.458e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.958e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.872e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.872e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.052e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.283e-17
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.715e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.937e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)9.417e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.417e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.4e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.4e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.254e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.921e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.921e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.921e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.774e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.736e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.174e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.038e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.097e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.313e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.098e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.098e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.098e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.084e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.084e-12
Glyma.15G024500 hypothetical protein AT3G13810:IDD11:indeterminate(ID)-domain 11 1Chr15:1970818–1978651 (-)4.122e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.725e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.315e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.725e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.725e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.279e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.157e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.883e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.405e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.257e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.505e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.586e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.221e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.681e-15
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.101e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.901e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)8.038e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.623e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.623e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.479e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.625e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)5.57e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.002e-12
Glyma.19G002200 hypothetical protein NA 1Chr19:144515–146552 (+)1.584e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)5.938e-15
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.322e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.542e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.942e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.822e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.822e-17
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.305e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.414e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.931e-11