Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03778

Metabolite ID
P03778
Deionized mass
207.0641 Da
Average m/z
208.0700
Average RT
7.8452
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.813e-14
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)9.929e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)5.309e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)4.291e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.291e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)7.801e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)9.639e-11
Glyma.18G226300 hypothetical protein NA 2Chr18:51471540–51498344 (+)5.604e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.296e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)8.139e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.247e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.343e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.039e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.039e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.039e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)4.634e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.154e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.024e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.26e-14
Glyma.07G223600 hypothetical protein NA 1Chr07:40077049–40082294 (+)4.115e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.291e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.291e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.291e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.913e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.913e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.335e-13
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.989e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.924e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.229e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.229e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.229e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.229e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.389e-11
Glyma.10G156300 hypothetical protein AT3G05210:ERCC1:nucleotide repair protein 1Chr10:39053531–39057116 (-)5.252e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.667e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.667e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.07e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.07e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.146e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)7.042e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)9.291e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.294e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.248e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.294e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.294e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.68e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.244e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.813e-14
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.117e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.273e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.739e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.982e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.302e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.302e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)8.856e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.924e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.924e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.373e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)4.622e-12