Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02996

Metabolite ID
P02996
Deionized mass
147.0893 Da
Average m/z
148.0954
Average RT
6.3020
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 3Chr14:47664851–47670630 (+)3.909e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.185e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.254e-15
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)6.599e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.393e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.995e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)8.755e-12
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)1.9e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.48e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.334e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.087e-14
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)3.624e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.921e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.998e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.428e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)7.514e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)7.514e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)7.514e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.726e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.43e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.43e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.389e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.498e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.873e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.873e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)3.742e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)8.602e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.699e-13
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)1.522e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.719e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.061e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)3.532e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)3.552e-11
Glyma.09G200300 hypothetical protein NA 1Chr09:42466263–42471449 (+)2.112e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.097e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)1.553e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.331e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)1.186e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.002e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.558e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.405e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.405e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.37e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.755e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.067e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.185e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.838e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.838e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.838e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.564e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.735e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.065e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.59e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.59e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)2.011e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.413e-12
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)7.715e-11
Glyma.16G040700 hypothetical protein AT3G03890:AT3G03890:FMN binding protein 1Chr16:3825551–3830340 (-)3.492e-11
Glyma.16G041000 hypothetical protein AT5G18140:AT5G18140:Chaperone DnaJ-domain superfamily protein 1Chr16:3852109–3856099 (+)3.492e-11
Glyma.16G041200 gdh1 AT3G03910:GDH3:glutamate dehydrogenase 3__AT5G18170:GDH1:glutamate dehydrogenase 1 1Chr16:3861427–3869280 (+)3.491e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)4.755e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.219e-13
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.144e-12
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.144e-12
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.144e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.617e-15
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.393e-11
Glyma.18G129100 hypothetical protein NA 1Chr18:17426745–17444205 (+)8.371e-11
Glyma.18G129200 hypothetical protein AT1G59820:ALA3:aminophospholipid ATPase 3 1Chr18:17461040–17470275 (+)8.371e-11
Glyma.18G129600 hypothetical protein NA 1Chr18:17682371–17682793 (+)8.371e-11
Glyma.18G130400 hypothetical protein NA 1Chr18:18115603–18128112 (+)2.104e-11