Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02804

Metabolite ID
P02804
Deionized mass
242.9603 Da
Average m/z
243.9656
Average RT
5.8826
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)6.086e-13
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 2Chr03:2124895–2135692 (-)1.662e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)7.176e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.445e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.464e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)4.689e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)5.569e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.665e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.42e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.458e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.768e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.991e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.156e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.789e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.257e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.152e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)1.146e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)7.421e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)7.421e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)4.684e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)4.684e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)7.421e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)4.747e-13
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)9.662e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)9.662e-11
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)2.451e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.85e-12
Glyma.07G184500 hypothetical protein AT5G64460:AT5G64460:Phosphoglycerate mutase family protein 1Chr07:35206642–35211159 (-)8e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.58e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.369e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)4.376e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.658e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.384e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.757e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.5e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.841e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.841e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.841e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.044e-12
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)9.966e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.119e-17
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.024e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.822e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.33e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.703e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.703e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.904e-16
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)3.6e-13
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)3.6e-13
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)3.6e-13
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)6.871e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.445e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)7.386e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.258e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.258e-11