Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02515

Metabolite ID
P02515
Deionized mass
170.0374 Da
Average m/z
171.0455
Average RT
5.3382
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
158
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

158 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)2.884e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 3Chr07:9523110–9526319 (+)1.749e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)5.382e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 3Chr15:48661607–48665946 (-)5.118e-13
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)4.078e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.956e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)6.035e-13
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)3.814e-15
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)8.254e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.415e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.307e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.283e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.283e-12
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)9.592e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)4.811e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.489e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)8.46e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)8.476e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)8.46e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.017e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.342e-13
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)2.884e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)2.884e-11
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)2.514e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)8.289e-14
Glyma.01G009700 hypothetical protein NA 1Chr01:952611–956924 (+)8.438e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.026e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.782e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.408e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.331e-15
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.127e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.879e-14
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.879e-14
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.879e-14
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.879e-14
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.879e-14
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.879e-14
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.879e-14
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.956e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)6.068e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)8.787e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.766e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)5.988e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)3.45e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)8.118e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.529e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.748e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.07e-13
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)5.877e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)1.567e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.434e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.697e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)2.449e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.126e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.963e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.285e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.415e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.415e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.458e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.932e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.932e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.932e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.528e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.675e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.968e-21
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.353e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.353e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.353e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.465e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.407e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.407e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.636e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.463e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.072e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.797e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)9.305e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)9.594e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.077e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.578e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.376e-11
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)4.02e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.816e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.291e-11
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)5.579e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.944e-12
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)1.882e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)1.882e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)5.797e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.189e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)4.108e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.207e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.613e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.104e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.017e-11
Glyma.11G236800 hypothetical protein AT5G09360:LAC14:laccase 14 1Chr11:33157016–33161441 (+)1.961e-11
Glyma.11G237100 hypothetical protein NA 1Chr11:33172417–33173178 (+)1.961e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)3.657e-13
Glyma.11G238100 hypothetical protein AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:33261569–33264662 (+)8.974e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)9.297e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.816e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.816e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)5.185e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)8.636e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.307e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.283e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.283e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.177e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.642e-13
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)8.36e-12
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)5.664e-13
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)9.592e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.666e-15
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.585e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.735e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.369e-19
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.931e-14
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.142e-13
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)1.409e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)1.093e-15
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)2.747e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)2.747e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)2.747e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)8.46e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)9.085e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.175e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.103e-17
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)2.852e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.721e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.048e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)5.99e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)4.388e-12
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)7.675e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.541e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)8.777e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.578e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.578e-12
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)1.184e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.467e-11
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)2.884e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)2.884e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)2.884e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)4.265e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)7.236e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)8.129e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)8.129e-11
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)1.176e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)3.808e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)8.566e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.742e-12
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)9.34e-12
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)1.59e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.315e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.178e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)6.545e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.285e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.259e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)8.551e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.802e-12