Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02113

Metabolite ID
P02113
Deionized mass
416.0121 Da
Average m/z
417.0190
Average RT
4.9341
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
117
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

117 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.124e-14
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)3.998e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)8.681e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.039e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.129e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.42e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.686e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.686e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.552e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.768e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.866e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.468e-18
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.927e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.124e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.944e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.315e-15
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)3.998e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)2.538e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.122e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.498e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.545e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.11e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.032e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.032e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.032e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.872e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.997e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.577e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.705e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)9.545e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.617e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.617e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.617e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.312e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.312e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.743e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.09e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.798e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.787e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.798e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.798e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.787e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.604e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.517e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.458e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.458e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.331e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.988e-16
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)4.321e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.363e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.363e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.686e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.686e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.399e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.686e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.036e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)4.977e-14
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)4.977e-14
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)6.047e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.971e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.334e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.101e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.682e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.968e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.505e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.505e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.505e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.505e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.963e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.462e-16
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.868e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.919e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.919e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.693e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.189e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.768e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.124e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.866e-13
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)9.665e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.209e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.144e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.467e-18
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)2.714e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.188e-11
Glyma.15G262200 hypothetical protein AT3G12760:AT3G12760:defective in cullin neddylation protein 1Chr15:49465185–49472595 (-)3.388e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)8.681e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)8.681e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.681e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)8.681e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.881e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.129e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.129e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.394e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.235e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.788e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.551e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.551e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)6.569e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)6.569e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.174e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.174e-11
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)4.583e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)4.721e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.053e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.504e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.122e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.594e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.594e-14
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)3.218e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)7.305e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)1.848e-11
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)1.848e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)1.393e-11
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)7.672e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.291e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.347e-13
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)3.61e-13