Overview Annotation GWAS Evidence Associated genes

P01325

Metabolite ID
P01325
Deionized mass
307.1223 Da
Average m/z
308.1298
Average RT
3.9023
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
149
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

149 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.723e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.909e-13
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)3.212e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.25e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.012e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.446e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.788e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)8.119e-15
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)7.84e-14
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)4.888e-11
Glyma.07G068800 hypothetical protein NA 2Chr07:6211775–6221107 (-)5.212e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)9.167e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.48e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.616e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.616e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.626e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.224e-12
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)6.508e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)6.384e-14
Glyma.16G219000 hypothetical protein NA 2Chr16:37634112–37638596 (-)1.217e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.47e-12
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)2.868e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.022e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)2.003e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)2.753e-14
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)2.753e-14
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)1.77e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.317e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.436e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.554e-11
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)1.562e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.24e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.308e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.838e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.44e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.065e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.48e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.877e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.877e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.877e-12
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)4.48e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.73e-13
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.469e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.874e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.301e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.761e-16
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.903e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.903e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.903e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.04e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.519e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.519e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.595e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.825e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.191e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.855e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.522e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.258e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.628e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.258e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.258e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.628e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.251e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.251e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.358e-12
Glyma.07G067000 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr07:6032415–6036498 (-)1.029e-11
Glyma.07G068500 hypothetical protein AT3G54980:AT3G54980:Pentatricopeptide repeat (PPR) superfamily protein__AT2G39230:LOJ:LATERAL ORGAN JUNCTION 1Chr07:6184449–6187743 (-)7.222e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.425e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.909e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.951e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)6.727e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.494e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.494e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)7.186e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.75e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)6.298e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)4.202e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)9.558e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.144e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.596e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.387e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)1.164e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.752e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.224e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.092e-13
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)6.311e-11
Glyma.09G212100 hypothetical protein AT4G19040:EDR2:ENHANCED DISEASE RESISTANCE 2 1Chr09:43601727–43616030 (-)3.128e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.916e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.916e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.916e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.916e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.288e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.23e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.425e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.425e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.754e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.754e-14
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)9.313e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.232e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.232e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.888e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.575e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)1.159e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.012e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.007e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.429e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.43e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.616e-14
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)6.089e-12
Glyma.14G043800 hypothetical protein NA 1Chr14:3329698–3331556 (+)3.609e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.685e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.539e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.224e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.224e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.429e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.744e-17
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.568e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.356e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.472e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.577e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.946e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.302e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.733e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.411e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.096e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.295e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.128e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.688e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)9.017e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.788e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.119e-15
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)4.28e-13
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.314e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)7.84e-14
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)4.813e-11
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)1.297e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.47e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.016e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.47e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)3.177e-12
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)3.177e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.195e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.073e-12
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)1.627e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.535e-12
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)6.391e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.275e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.377e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.469e-12