Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00923

Metabolite ID
P00923
Deionized mass
456.1477 Da
Average m/z
457.1530
Average RT
3.7056
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
144
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

144 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 6Chr03:2202325–2234931 (+)8.804e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)8.866e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.16e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.052e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)7.498e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.098e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.601e-12
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)1.242e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)3.749e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)8.082e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.423e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.97e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.035e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.035e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.035e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.809e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)9.453e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.135e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.135e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.442e-15
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.445e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.537e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.224e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.446e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.397e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.052e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.847e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)5.112e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)9.566e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)5.048e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)5.048e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)5.048e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)2.105e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)2.259e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.553e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)6.423e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)2.734e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.795e-13
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)5.513e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)4.829e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.63e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.216e-12
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)3.995e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)4.107e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.259e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.998e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.083e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.095e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.095e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.135e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.347e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.347e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.347e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.896e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.933e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.557e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.89e-14
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.727e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.727e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.727e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.838e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.838e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.838e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.17e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.17e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.922e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.164e-12
Glyma.06G134900 hypothetical protein AT4G27670:HSP21:heat shock protein 21 1Chr06:11083841–11088991 (+)9.63e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.93e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.179e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.157e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)5.223e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.967e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.967e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.376e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.695e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.97e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.97e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.97e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.97e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.668e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.035e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.035e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.035e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)4.434e-14
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.035e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.035e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.66e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.028e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)5.54e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.071e-13
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.257e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.023e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.023e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.373e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.517e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.841e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.841e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.498e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.874e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.24e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.24e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.135e-13
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)2.846e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.14e-15
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.39e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.448e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.031e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.81e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)6.441e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.311e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.262e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.947e-15
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.166e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.495e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.056e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)8.866e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)9.719e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.098e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.098e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.098e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.098e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.761e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.763e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.284e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.629e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.493e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.446e-12
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)1.053e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)7.373e-12
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)4.86e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.397e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)4.216e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.952e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.952e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)7.373e-12
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)3.142e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)1.242e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)1.242e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)1.242e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)1.242e-11
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)1.994e-11
Glyma.19G041000 hypothetical protein NA 1Chr19:5964641–5965947 (-)1.994e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)2.459e-11