Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00638

Metabolite ID
P00638
Deionized mass
150.0524 Da
Average m/z
151.0596
Average RT
3.6029
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)5.012e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.686e-12
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)9.181e-11
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)1.077e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.89e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)5.012e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.991e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)7.837e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.52e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)9.181e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.966e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.139e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.311e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.51e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.51e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)9.157e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.779e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.172e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.408e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.947e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.947e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.947e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.947e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.114e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.139e-15
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.694e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.18e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)1.432e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)1.813e-11
Glyma.13G318900 hypothetical protein AT2G27810:NAT12:nucleobase-ascorbate transporter 12 1Chr13:41337944–41344534 (+)3.714e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.517e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.283e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)9.689e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)9.418e-13
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)9.418e-13
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)9.491e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.807e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.686e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)3.515e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)8.77e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.784e-11