Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00609

Metabolite ID
P00609
Deionized mass
257.2411 Da
Average m/z
258.2483
Average RT
3.5464
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
66
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

66 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 4Chr06:49451501–49461369 (-)7.284e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.267e-17
Glyma.11G241200 hypothetical protein AT5G10320:AT5G10320:ATP synthase subunit B 2Chr11:33537120–33542455 (-)1.746e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.733e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.267e-17
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.712e-16
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.358e-14
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)3.351e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.348e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.793e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.509e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.298e-13
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.298e-13
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)8.169e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.456e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)6.363e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)4.443e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.284e-17
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.284e-17
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.752e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.071e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.887e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.329e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.247e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.366e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.366e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.169e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.169e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.169e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.851e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)4.536e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)2.327e-11
Glyma.11G238100 hypothetical protein AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:33261569–33264662 (+)9.554e-13
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)7.047e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)1.438e-15
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)5.45e-11
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)1.651e-14
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)1.651e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.463e-12
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)1.331e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)1.331e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.101e-13
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)3.524e-12
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)3.524e-12
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)2.789e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)1.25e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.74e-17
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.21e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.719e-20
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.052e-13
Glyma.16G020600 hypothetical protein AT2G46700:CRK3:CDPK-related kinase 3 1Chr16:1892131–1900217 (+)9.102e-11
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)3.863e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)8.784e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.55e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.657e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.258e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.972e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.457e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.457e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.21e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.273e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.273e-14
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)8.453e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)1.919e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)8.612e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.061e-11