Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00106

Metabolite ID
P00106
Deionized mass
254.1831 Da
Average m/z
255.1896
Average RT
3.0538
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
83
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

83 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 8Chr18:8991445–9001857 (-)2.006e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.19e-11
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)3.526e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)4.964e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)2.341e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.327e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.377e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.378e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.333e-11
Glyma.18G090100 hypothetical protein NA 2Chr18:8939839–8941585 (+)2.006e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.846e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.916e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.78e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.761e-12
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)6.344e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.282e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)6.302e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.825e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.607e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.153e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.758e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.957e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.957e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.004e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.432e-12
Glyma.06G316600 hypothetical protein AT4G25230:RIN2:RPM1 interacting protein 2__AT5G51450:RIN3:RPM1 interacting protein 3 1Chr06:50539403–50549269 (+)9.887e-11
Glyma.06G316800 hypothetical protein NA 1Chr06:50560736–50563810 (-)2.285e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)6.761e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.997e-12
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)3.352e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.323e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.188e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.805e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.976e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.75e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.75e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.75e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.75e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)3.104e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.307e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)3.104e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.012e-13
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)9.946e-11
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)8.028e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.498e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.498e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.325e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.483e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.483e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.377e-13
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)3.407e-13
Glyma.13G293600 hypothetical protein NA 1Chr13:39321355–39324767 (+)3.171e-11
Glyma.13G293800 hypothetical protein NA 1Chr13:39343173–39346777 (+)1.102e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.944e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.101e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.004e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.36e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.695e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)3.513e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.792e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.792e-13
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)3.411e-13
Glyma.14G073100 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr14:6138618–6142249 (-)6.868e-11
Glyma.14G073200 hypothetical protein NA 1Chr14:6151199–6153371 (-)6.868e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.55e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.333e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.155e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.652e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.039e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.931e-13
Glyma.18G089800 hypothetical protein AT5G55250:IAMT1:IAA carboxylmethyltransferase 1 1Chr18:8921173–8925579 (+)2.006e-11
Glyma.18G090300 hypothetical protein AT5G55210:AT5G55210:uncharacterized protein 1Chr18:8954961–8957926 (+)2.006e-11
Glyma.18G090500 hypothetical protein AT4G26810:AT4G26810:SWIB/MDM2 domain superfamily protein 1Chr18:8979176–8986302 (-)2.006e-11
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)2.145e-11
Glyma.18G090800 hypothetical protein AT3G20300:AT3G20300:extracellular ligand-gated ion channel protein (DUF3537) 1Chr18:9018768–9024832 (-)2.006e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.846e-12
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)9.816e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)3.526e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)3.526e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)3.526e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)3.526e-11
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)4.837e-11
Glyma.19G041000 hypothetical protein NA 1Chr19:5964641–5965947 (-)4.837e-11