SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Gene Associated metabolites Research resources

GENE DETAIL · Glycine max

Glyma.16G118100

Description hypothetical protein

Gene interval Chr16:26324650–26336836 (+), Wm82.a2.v1 · 1-based inclusive

Arabidopsis ortholog AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein

Genome context

Explore gene–feature relationships using Overlap or Within ±5 kb. Scope definitions

Explore research resources ↓

Associated metabolite features3548Overlap

Maximum supporting SNP records4

Features with ≥2 supporting SNP records1505

Supporting SNP records satisfy P < 10⁻¹⁰ and the selected positional scope. Counts cover the 30345 features with indexed GWAS data.

Additional descriptive statistic

Mean supporting SNP records per associated feature: 1.6189.

Research resources

Follow this gene identifier to compare annotations, examine protein function and find supporting literature.

SoyBase ↗Gene models and soybean annotations
NCBI Gene ↗Gene records, sequences and cross-references
UniProt ↗Protein function, domains and annotation evidence
PubMed ↗Publications mentioning this identifier

These links search the displayed identifier. Check the organism, genome assembly and evidence in the destination record.

Compare gene models, expression and reported orthologs

SoyBase gene-name translator ↗SoyBase expression resources ↗Legume Information System ↗

Arabidopsis IDs in the supplied annotation

AT2G17570NCBI Gene ↗UniProt ↗

Use expression and ortholog evidence to develop a testable hypothesis. The linked resources do not establish the function of this soybean gene in the measured samples.

Associated metabolites

Browse associated features and open their GWAS evidence or compound candidates.

3548 matching features · page 145 of 355

Metabolite ID	Candidate annotation	Deionized mass (Da)	Supporting SNP records	Minimum P
P50192	No candidate annotation	727.3025	2	1.82e-14
P50219	Reissantin B	745.2817	2	1.485e-11
P50351	Nitrarine	307.2073	2	2.128e-11
P50429	Fortimicin A	405.2553	2	1.89e-12
P50462	Fungicide K 99-5278B	564.3682	2	1.43e-11
P50473	Gagunin K	706.4258	2	1.136e-12
P50474	Dolichotheline	195.1333	2	3.264e-11
P50483	Deacetylmoxisylyte	237.1743	2	1.711e-11
P50499	Indene	116.0616	2	5.617e-13
P50624	Isocitral	152.1184	2	1.182e-11