Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55376

Metabolite ID
P55376
Deionized mass
465.3991 Da
Average m/z
466.4057
Average RT
31.7622
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.529e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.557e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)6.232e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)4.407e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.169e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.169e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.78e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.102e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.529e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.77e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.769e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.093e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.651e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.317e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.798e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.578e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.677e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.422e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.422e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.238e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.91e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.91e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.91e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)4.435e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.171e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.151e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.557e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.557e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.069e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.258e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.473e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.857e-14
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)3.191e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.261e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.71e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)6.344e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.097e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.097e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.836e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.942e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.942e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.169e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)5.444e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.694e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.464e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.327e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.424e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.9e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.176e-18
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.337e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.692e-11
Glyma.18G184200 hypothetical protein NA 1Chr18:44364673–44366631 (-)8.357e-11
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)2.758e-12
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)2.758e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.737e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.737e-11
Glyma.19G248000 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr19:49394278–49398822 (-)5.758e-11