Overview Annotation GWAS Evidence Associated genes

P55369

Metabolite ID
P55369
Deionized mass
505.2250 Da
Average m/z
506.2316
Average RT
31.7533
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
151
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

151 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.313e-11
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)7.905e-14
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)6.087e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)2.056e-17
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)1.613e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.699e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)1.457e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.838e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.61e-14
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)7.085e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.601e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.424e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.824e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)5.259e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)5.259e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.313e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.107e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)7.905e-14
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)5.845e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)3.015e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)3.015e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.9e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.076e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.039e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.245e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.21e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.681e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.681e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.536e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.89e-12
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)7.918e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.177e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.003e-12
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)6.031e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.118e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)4.959e-12
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)8.471e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.041e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)1.816e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.08e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.676e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.026e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.624e-14
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)2.923e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)2.923e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.817e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.817e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.068e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.332e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.994e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.838e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.838e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.838e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.838e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)5.159e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)2.117e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)5.621e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)8.75e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.831e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.558e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.352e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.541e-19
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.197e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.569e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)7.369e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)8.48e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.768e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.022e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.113e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.77e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.229e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.024e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.024e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.888e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.888e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.888e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.888e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.614e-13
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)5.529e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.138e-13
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)1.957e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.442e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.495e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.495e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.495e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.495e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)6.987e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.03e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)9.995e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.53e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.53e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.53e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.343e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.642e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.642e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.528e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.528e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.086e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.841e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.841e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.841e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.576e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.802e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.872e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.966e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.223e-13
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)5.914e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.129e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.129e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.953e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.58e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.574e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.574e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)9.438e-13
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)3.608e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.371e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.467e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.371e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.371e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.66e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.796e-17
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.341e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.916e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.568e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.982e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.017e-13
Glyma.16G147900 hypothetical protein NA 1Chr16:30864919–30872425 (+)6.619e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.838e-12
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)4.663e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.142e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.971e-14
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)9.486e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.935e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.935e-14
Glyma.17G145500 hypothetical protein AT4G17510:UCH3:ubiquitin C-terminal hydrolase 3 1Chr17:11947484–11955499 (-)2.807e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)7.329e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)2.278e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)2.278e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)1.738e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)6.226e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)5.704e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.489e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.842e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.244e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)7.49e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.774e-14
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.005e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.824e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.719e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.719e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.015e-11