Overview Annotation GWAS Evidence Associated genes

P54965

Metabolite ID
P54965
Deionized mass
642.1778 Da
Average m/z
643.1829
Average RT
31.4944
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
11
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

11 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.906e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)5.191e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.877e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.078e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.191e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.536e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.906e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.906e-11
Glyma.18G042300 hypothetical protein AT1G66140:ZFP4:zinc finger protein 4 1Chr18:3586380–3589732 (+)1.582e-11
Glyma.18G042500 hypothetical protein NA 1Chr18:3597323–3598404 (-)1.582e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.735e-11