Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54917

Metabolite ID
P54917
Deionized mass
361.0989 Da
Average m/z
362.1069
Average RT
31.4498
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G171400 hypothetical protein NA 3Chr14:42398866–42404627 (+)4.048e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.009e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.313e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.676e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.963e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.332e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)5.054e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.898e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.883e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.481e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.598e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.598e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.365e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.282e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.282e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.282e-12
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)2.781e-13
Glyma.05G222900 hypothetical protein AT4G29490:AT4G29490:Metallopeptidase M24 family protein 1Chr05:40226295–40233649 (-)3.829e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.763e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.081e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.081e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.081e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.571e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.894e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.271e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.271e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.941e-12
Glyma.07G202300 IFS1 isoflavone synthase 1 NA 1Chr07:37166660–37169027 (+)4.663e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.332e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.332e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.332e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.332e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.561e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.449e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.784e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.401e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.401e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.401e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.7e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)1.227e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.089e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)4.048e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.073e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.009e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.009e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.009e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.009e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)8.835e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)9.541e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.676e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.676e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.369e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.369e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.767e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.422e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.385e-11