Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54660

Metabolite ID
P54660
Deionized mass
244.1257 Da
Average m/z
245.1326
Average RT
31.1639
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.453e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.336e-11
Glyma.16G055000 hypothetical protein NA 2Chr16:5411241–5413143 (-)5.275e-12
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)2.083e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)2.298e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.697e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)8.066e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)7.69e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.137e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.11e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.38e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.38e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.847e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.012e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.012e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.012e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)5.487e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)2.541e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.953e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.416e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.921e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.905e-15
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)6.329e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.336e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.336e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.336e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.336e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.256e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)4.034e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.95e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.112e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.112e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.112e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.112e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.667e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.361e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.901e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.279e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)3.063e-12
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)9.202e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.768e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.684e-13
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)4.941e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.104e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.815e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.32e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.842e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.587e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.587e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)5.587e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)3.145e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)7.152e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)5.096e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)1.253e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)4.383e-13
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)3.828e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.114e-12
Glyma.19G137700 hypothetical protein NA 1Chr19:39904075–39916887 (+)7.02e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)3.179e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.164e-11