Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54628

Metabolite ID
P54628
Deionized mass
175.9835 Da
Average m/z
176.9903
Average RT
31.1319
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.525e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.37e-13
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)8.611e-19
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.038e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)7.87e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.143e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.386e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.175e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.175e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.175e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.157e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.535e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.316e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.494e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.494e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.046e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.123e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)2.53e-12
Glyma.07G010700 hypothetical protein AT3G13730:CYP90D1:cytochrome P450, family 90, subfamily D, polypeptide 1 1Chr07:817488–822276 (+)2.53e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.74e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.74e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.615e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.378e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.378e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.817e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.514e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.514e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.514e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.514e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.637e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.134e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.317e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.025e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.317e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.317e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.678e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.386e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.254e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.243e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.37e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.406e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.288e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)2.259e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.185e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.913e-13
Glyma.17G039200 hypothetical protein NA 1Chr17:2903795–2919460 (+)3.85e-11
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)2.701e-12
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)4.935e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)3.739e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.16e-11