Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54353

Metabolite ID
P54353
Deionized mass
487.3994 Da
Average m/z
488.4067
Average RT
30.9579
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)7.003e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.174e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.263e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.195e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.39e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.39e-12
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)6.92e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)5.702e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)5.702e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)5.702e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.129e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.766e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.958e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)8.732e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)9.737e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)7.003e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.038e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.51e-13
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.945e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.945e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.567e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.89e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.124e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.037e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.002e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.282e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)4.729e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.529e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.529e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.002e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.002e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.758e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.398e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)4.93e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.492e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.704e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.704e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.777e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.521e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.442e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.687e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)6.779e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.193e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.22e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.22e-11
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)4.006e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9e-13