Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54299

Metabolite ID
P54299
Deionized mass
656.2808 Da
Average m/z
657.2872
Average RT
30.8889
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.936e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.484e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.095e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.746e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.609e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.937e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.942e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.047e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)7.905e-14
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)2.34e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.6e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.349e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.937e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.485e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.485e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.478e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.945e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.279e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.29e-11
Glyma.10G236000 hypothetical protein NA 1Chr10:46499079–46501955 (-)2.658e-12
Glyma.10G236100 hypothetical protein AT5G52280:AT5G52280:Myosin heavy chain-related protein 1Chr10:46503152–46510614 (-)2.658e-12
Glyma.10G236800 hypothetical protein NA 1Chr10:46559759–46563487 (+)2.658e-12
Glyma.10G237600 hypothetical protein NA 1Chr10:46607534–46609838 (+)8.975e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)6.983e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.746e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.936e-12
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)2.573e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)2.573e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.834e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.719e-11
Glyma.18G033800 hypothetical protein NA 1Chr18:2600457–2604130 (+)9.733e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.024e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.8e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.8e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)3.809e-12
Glyma.20G094300 hypothetical protein NA 1Chr20:33753229–33754924 (-)3.447e-11
Glyma.20G094400 hypothetical protein AT5G02270:ABCI20:non-intrinsic ABC protein 9 1Chr20:33754119–33755970 (-)3.447e-11
Glyma.20G094500 hypothetical protein NA 1Chr20:33759417–33761555 (-)3.447e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.95e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.652e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.354e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.004e-12