Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54059

Metabolite ID
P54059
Deionized mass
365.2593 Da
Average m/z
366.2675
Average RT
30.5923
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.377e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.296e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)3.92e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.967e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.242e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.021e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)5.188e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.91e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.104e-11
Glyma.19G128200 hypothetical protein NA 2Chr19:38739769–38743404 (+)4.596e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.505e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.244e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.845e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.845e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.845e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.38e-11
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)5.55e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.034e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.034e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.034e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)6.568e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)6.568e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.439e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)3.467e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.735e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.457e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.226e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.986e-11
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)6.906e-11
Glyma.11G105600 hypothetical protein NA 1Chr11:8021436–8024175 (+)1.329e-12
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)4.25e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.92e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.931e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.679e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)5.042e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)5.042e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.647e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.021e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.768e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)6.912e-12
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.05e-11
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 1Chr16:6914905–6920531 (+)5.724e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.032e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.529e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.377e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.377e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.827e-15
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.469e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.118e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)6.899e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.057e-11
Glyma.18G243300 hypothetical protein AT3G24090:GFAT:putative glucosamine-fructose-6-phosphate aminotransferase 1Chr18:53151480–53157909 (+)5.123e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)7.5e-11