Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53875

Metabolite ID
P53875
Deionized mass
609.2621 Da
Average m/z
610.2699
Average RT
30.3989
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.273e-13
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)4.325e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)7.82e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.662e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.171e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.967e-16
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)3.941e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.273e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.295e-11
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)9.623e-13
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)1.88e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)4.325e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)1.722e-21
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)2.908e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)7.652e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.048e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.527e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.019e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)8.487e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.878e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.927e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.927e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.926e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.926e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.705e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.088e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.152e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.152e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.319e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)8.284e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.255e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.662e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.171e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.15e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.476e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.046e-15
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)3.992e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.125e-11
Glyma.17G112200 hypothetical protein AT5G52580:AT5G52580:RabGAP/TBC domain-containing protein 1Chr17:8837513–8848411 (+)7.913e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)6.38e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.065e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.726e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.726e-12
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)5.66e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)5.66e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)5.66e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.8e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.86e-11
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)1.181e-13
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)9.623e-13
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)5.362e-11
Glyma.20G026300 hypothetical protein AT1G26560:BGLU40:beta glucosidase 40 1Chr20:2894580–2905241 (+)4.5e-11
Glyma.20G026700 hypothetical protein NA 1Chr20:2935653–2945665 (-)2.106e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)6.872e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.219e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)6.631e-15
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)1.092e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)9.775e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)2.05e-11
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)9.969e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.902e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.579e-11