Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53668

Metabolite ID
P53668
Deionized mass
637.2985 Da
Average m/z
638.3054
Average RT
30.2237
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)2.456e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.578e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.405e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.405e-15
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.286e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.399e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.577e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.602e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.519e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.522e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.544e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.544e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.544e-11
Glyma.07G255200 hypothetical protein AT3G23540:AT3G23540:alpha/beta-Hydrolases superfamily protein__AT4G14290:AT4G14290:alpha/beta-Hydrolases superfamily pr… 1Chr07:43155622–43165663 (+)9.276e-11
Glyma.07G255400 hypothetical protein AT5G19010:MPK16:mitogen-activated protein kinase 16 1Chr07:43173504–43180366 (-)9.276e-11
Glyma.07G255900 hypothetical protein AT3G23600:AT3G23600:alpha/beta-Hydrolases superfamily protein 1Chr07:43214683–43218261 (-)9.276e-11
Glyma.07G256200 hypothetical protein AT3G23580:RNR2A:ribonucleotide reductase 2A 1Chr07:43228132–43232417 (+)9.276e-11
Glyma.07G257300 hypothetical protein AT3G06130:AT3G06130:Heavy metal transport/detoxification superfamily protein__AT5G19090:AT5G19090:Heavy metal transport… 1Chr07:43333980–43336527 (+)9.276e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.381e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.097e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.854e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.854e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.913e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.913e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.803e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.554e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.856e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.856e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.405e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.405e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.196e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.177e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.011e-17
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.456e-11
Glyma.16G200500 hypothetical protein AT5G51840:AT5G51840:junctophilin-like protein 1Chr16:36163525–36167913 (-)3.076e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.672e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.911e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.991e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.991e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.097e-12