Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53219

Metabolite ID
P53219
Deionized mass
292.0920 Da
Average m/z
293.1007
Average RT
29.8165
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.686e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)6.819e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.833e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.417e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.449e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.907e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)8.147e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.474e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)3.811e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.871e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.232e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.581e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)9.693e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)7.903e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)7.902e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)7.903e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)7.903e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.625e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.932e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.182e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.182e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.095e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.817e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)9.493e-11
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)4.898e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)5.554e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)5.554e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.372e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.271e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)5.723e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.879e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.227e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.686e-12
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)7.817e-12
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)7.817e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.417e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.467e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.02e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.467e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.467e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.137e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.027e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.452e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.642e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.623e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.173e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.848e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)8.438e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.438e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.299e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)9.361e-11