Overview Annotation GWAS Evidence Associated genes

P53176

Metabolite ID
P53176
Deionized mass
258.8967 Da
Average m/z
259.9015
Average RT
29.7686
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
155
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

155 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 4Chr16:32076715–32092322 (-)8.752e-16
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.217e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.206e-12
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)1.565e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.349e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.041e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.637e-12
Glyma.18G106600 hypothetical protein NA 3Chr18:11947553–11951868 (+)2.616e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)1.693e-13
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 2Chr02:5577271–5582873 (-)3.63e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.34e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.147e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)2.153e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)9.578e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.427e-14
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)5.181e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.312e-14
Glyma.15G019600 hypothetical protein AT5G48120:MET18:ARM repeat superfamily protein 2Chr15:1524472–1536978 (-)8.765e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.281e-12
Glyma.16G159100 hypothetical protein NA 2Chr16:31889835–31894662 (+)7.5e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)4.972e-12
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)4.224e-14
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)1.825e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.206e-12
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)5.942e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)6.468e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.301e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.897e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.434e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)5.377e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.318e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.408e-14
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)1.065e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.108e-16
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.517e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.823e-14
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.234e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.614e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.796e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.342e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.05e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.436e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.532e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)6.31e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)6.31e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.073e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)7.568e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.041e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.911e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.041e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.041e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.911e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.457e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)4.622e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.294e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.348e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.759e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.153e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.153e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.145e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.153e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.932e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.932e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.123e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)6.259e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.633e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.922e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.904e-17
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)1.197e-12
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.685e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.656e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)2.663e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.3e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)8.796e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.022e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.065e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.206e-13
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)6.498e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)3.699e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.849e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.849e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.971e-13
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)7.727e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.622e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.622e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.011e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.011e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)4.089e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)3.368e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.416e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)1.499e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.987e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.626e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)2.501e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)2.501e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.462e-12
Glyma.15G019700 hypothetical protein AT3G21360:AT3G21360:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr15:1539104–1541259 (+)6.841e-11
Glyma.15G019800 hypothetical protein AT1G51940:LYK3:protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 1Chr15:1540655–1547540 (-)6.841e-11
Glyma.15G020300 hypothetical protein AT1G51950:IAA18:indole-3-acetic acid inducible 18__AT3G16500:PAP1:phytochrome-associated protein 1 1Chr15:1573643–1577917 (+)6.733e-12
Glyma.15G020800 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr15:1605458–1610034 (-)6.629e-11
Glyma.15G021000 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr15:1616486–1626531 (-)6.629e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.414e-17
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.589e-17
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.414e-17
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.414e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.004e-15
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)2.976e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.349e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.349e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.349e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.349e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.922e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.011e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.74e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.637e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.637e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.627e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.457e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.747e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.662e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.57e-11
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)4.381e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.336e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.981e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.981e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.728e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)6.062e-11
Glyma.16G161600 hypothetical protein AT1G71720:PDE338:Nucleic acid-binding proteins superfamily 1Chr16:32094568–32100669 (+)1.459e-12
Glyma.16G162900 hypothetical protein NA 1Chr16:32171560–32173311 (+)7.278e-11
Glyma.16G163000 hypothetical protein NA 1Chr16:32179002–32179178 (-)7.278e-11
Glyma.16G178800 hypothetical protein NA 1Chr16:33950003–33953968 (-)1.084e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.37e-16
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.247e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.997e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.924e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)1.418e-12
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)1.418e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.581e-14
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.897e-14
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.581e-14
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)3.118e-14
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)4.647e-12
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)4.647e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)5.781e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)4.834e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.586e-11
Glyma.18G214000 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr18:50088148–50092969 (-)2.315e-11
Glyma.18G220800 hypothetical protein NA 1Chr18:50782488–50785467 (+)7.558e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.44e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.847e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.148e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.148e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.721e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.047e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.27e-13