Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52816

Metabolite ID
P52816
Deionized mass
218.1652 Da
Average m/z
219.1728
Average RT
29.2002
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
105
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

105 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.887e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.769e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.104e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)4.507e-15
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.198e-11
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)1.686e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.445e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.445e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.444e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.816e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.816e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.579e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.108e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)1.778e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)3.292e-14
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)5.511e-12
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)9.248e-13
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)5.855e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.518e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.834e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.46e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.46e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.531e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.189e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.189e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.189e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.614e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.427e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.396e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.913e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.545e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.545e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.229e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)9.757e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)9.757e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.119e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.171e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.314e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.769e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.769e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.643e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.737e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)7.533e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)8.433e-13
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)7.595e-12
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)2.25e-12
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)7.723e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)8.101e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)3.308e-12
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)8.055e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.67e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.344e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.48e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.445e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.445e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.445e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.445e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.445e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)5.192e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)6.267e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.131e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.131e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.461e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)1.589e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.589e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.816e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.816e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.573e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.939e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.958e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.958e-11
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)7.97e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.937e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)6.466e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)6.465e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.997e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.888e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.997e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.997e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.043e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.9e-15
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.087e-15
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.017e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.417e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.193e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.993e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.063e-14
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)8.843e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.522e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)4.901e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)4.901e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.535e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.015e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.104e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.213e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.213e-13
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.702e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)4.507e-15
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)2.262e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.163e-11
Glyma.20G100000 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic AT2G31840:MRL7-L:Thioredoxin superfamily protein 1Chr20:34320945–34324107 (+)2.622e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.122e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.009e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.602e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)7.987e-11