P52469
Metabolite ID
P52469
Deionized mass
354.2722 Da
Average m/z
355.2780
Average RT
28.6042
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
116
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
116 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.11G166200 | hypothetical protein | NA | 4 | Chr11:15951003–15963149 (-) | 2.772e-11 | |
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 2.061e-13 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 3 | Chr13:31727841–31735910 (-) | 2.171e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 2 | Chr03:2423540–2428634 (-) | 5.781e-13 | |
| Glyma.11G049700 | hypothetical protein | NA | 2 | Chr11:3731308–3734534 (+) | 3.58e-19 | |
| Glyma.11G167800 | hypothetical protein | NA | 2 | Chr11:16649420–16666371 (+) | 2.772e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 1.02e-13 | |
| Glyma.14G149300 | hypothetical protein | NA | 2 | Chr14:32235308–32258014 (+) | 3.187e-12 | |
| Glyma.16G196900 | hypothetical protein | NA | 2 | Chr16:35841279–35846894 (-) | 7.322e-11 | |
| Glyma.16G203300 | hypothetical protein | AT5G62230:ERL1:ERECTA-like 1 | 2 | Chr16:36437330–36445131 (+) | 2.865e-11 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 2.061e-13 | |
| Glyma.19G029600 | hypothetical protein | NA | 2 | Chr19:3681517–3690884 (-) | 5.327e-12 | |
| Glyma.19G029800 | hypothetical protein | NA | 2 | Chr19:3724518–3729860 (-) | 4.931e-11 | |
| Glyma.01G099100 | hypothetical protein | NA | 1 | Chr01:33017228–33023840 (+) | 1.779e-12 | |
| Glyma.01G099600 | hypothetical protein | AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein | 1 | Chr01:33115843–33125726 (-) | 1.779e-12 | |
| Glyma.01G099900 | hypothetical protein | NA | 1 | Chr01:33275414–33282430 (+) | 1.779e-12 | |
| Glyma.01G124100 | hypothetical protein | NA | 1 | Chr01:42886229–42892204 (-) | 5.303e-11 | |
| Glyma.01G169700 | hypothetical protein | AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 | 1 | Chr01:50715084–50719427 (-) | 2.859e-11 | |
| Glyma.01G169800 | hypothetical protein | AT4G36400:D2HGDH:FAD-linked oxidases family protein | 1 | Chr01:50726088–50733347 (-) | 2.859e-11 | |
| Glyma.02G086900 | hypothetical protein | AT3G24130:AT3G24130:Pectin lyase-like superfamily protein | 1 | Chr02:7553127–7557516 (-) | 2.417e-11 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 7.278e-12 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 1.173e-11 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 3.544e-12 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 5.741e-14 | |
| Glyma.03G031700 | hypothetical protein | AT1G79600:AT1G79600:Protein kinase superfamily protein | 1 | Chr03:3567906–3572939 (-) | 4.378e-11 | |
| Glyma.03G041800 | hypothetical protein | NA | 1 | Chr03:5307518–5311842 (+) | 5.931e-11 | |
| Glyma.03G135600 | hypothetical protein | NA | 1 | Chr03:35109981–35110632 (-) | 8.638e-11 | |
| Glyma.03G136000 | hypothetical protein | NA | 1 | Chr03:35138670–35188160 (-) | 3.941e-11 | |
| Glyma.03G136100 | hypothetical protein | NA | 1 | Chr03:35199503–35203392 (-) | 1.596e-11 | |
| Glyma.03G148900 | hypothetical protein | NA | 1 | Chr03:36449311–36451278 (+) | 2.017e-11 | |
| Glyma.03G149000 | hypothetical protein | AT2G48010:RKF3:receptor-like kinase in in flowers 3 | 1 | Chr03:36454104–36456822 (+) | 9.246e-12 | |
| Glyma.04G116900 | hypothetical protein | NA | 1 | Chr04:13696275–13700803 (+) | 4.469e-12 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 6.308e-11 | |
| Glyma.05G170800 | hypothetical protein | AT4G20400:JMJ14:JUMONJI 14__AT2G34880:MEE27:Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type… | 1 | Chr05:36115990–36124724 (-) | 3.87e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 5.887e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 2.415e-13 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.587e-13 | |
| Glyma.06G315100 | hypothetical protein | AT5G04930:ALA1:aminophospholipid ATPase 1 | 1 | Chr06:50401945–50408153 (+) | 3.444e-11 | |
| Glyma.06G316500 | hypothetical protein | AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein | 1 | Chr06:50531222–50538652 (-) | 4.004e-11 | |
| Glyma.07G087700 | hypothetical protein | AT3G24495:MSH7:MUTS homolog 7 | 1 | Chr07:8111751–8121053 (+) | 2.662e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 5.209e-12 | |
| Glyma.08G202000 | hypothetical protein | AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | 1 | Chr08:16375907–16384294 (-) | 5.361e-14 | |
| Glyma.08G336900 | hypothetical protein | AT1G55730:CAX5:cation exchanger 5 | 1 | Chr08:45376142–45387404 (-) | 7.739e-11 | |
| Glyma.09G052700 | hypothetical protein | AT1G31120:KUP10:K+ uptake permease 10 | 1 | Chr09:4617652–4626364 (+) | 1.176e-12 | |
| Glyma.09G058900 | hypothetical protein | NA | 1 | Chr09:5397968–5404650 (-) | 8.443e-12 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 1.581e-12 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 2.865e-16 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 1.044e-13 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 1.044e-13 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 1.044e-13 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 1.044e-13 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 4.387e-14 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 4.445e-16 | |
| Glyma.10G238200 | hypothetical protein | AT5G07250:RBL3:RHOMBOID-like protein 3 | 1 | Chr10:46680865–46684088 (+) | 1.542e-11 | |
| Glyma.11G048300 | hypothetical protein | AT4G37640:ACA2:calcium ATPase 2 | 1 | Chr11:3601241–3607177 (+) | 2.825e-16 | |
| Glyma.11G048600 | hypothetical protein | AT5G67470:FH6:formin homolog 6 | 1 | Chr11:3634128–3639401 (-) | 5.783e-12 | |
| Glyma.11G050300 | hypothetical protein | AT2G23093:AT2G23093:Major facilitator superfamily protein | 1 | Chr11:3765453–3771565 (+) | 5.621e-19 | |
| Glyma.11G050500 | hypothetical protein | AT5G67370:CGLD27:DUF1230 family protein (DUF1230) | 1 | Chr11:3778152–3782174 (+) | 5.62e-19 | |
| Glyma.11G050600 | hypothetical protein | NA | 1 | Chr11:3779988–3786583 (-) | 5.62e-19 | |
| Glyma.11G051600 | hypothetical protein | NA | 1 | Chr11:3857225–3859564 (-) | 5.621e-19 | |
| Glyma.11G062400 | hypothetical protein | AT4G36860:AT4G36860:LIM domain-containing protein | 1 | Chr11:4720040–4726569 (+) | 5.523e-11 | |
| Glyma.11G070700 | hypothetical protein | NA | 1 | Chr11:5282926–5287258 (+) | 1.197e-11 | |
| Glyma.11G166100 | hypothetical protein | AT2G30110:UBA1:ubiquitin-activating enzyme 1 | 1 | Chr11:15941545–15948932 (+) | 2.772e-11 | |
| Glyma.11G167200 | hypothetical protein | AT5G58550:EOL2:ETO1-like 2 | 1 | Chr11:16317737–16322178 (-) | 2.772e-11 | |
| Glyma.11G169000 | hypothetical protein | AT5G42140:AT5G42140:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein | 1 | Chr11:17630347–17635221 (-) | 2.772e-11 | |
| Glyma.11G169100 | hypothetical protein | NA | 1 | Chr11:17689415–17689861 (+) | 2.772e-11 | |
| Glyma.11G169300 | hypothetical protein | AT2G30080:ZIP6:ZIP metal ion transporter family | 1 | Chr11:17933930–17936688 (+) | 2.772e-11 | |
| Glyma.11G169900 | hypothetical protein | AT2G30070:KT1:potassium transporter 1 | 1 | Chr11:18079371–18084598 (-) | 2.772e-11 | |
| Glyma.11G171200 | hypothetical protein | AT5G58610:AT5G58610:PHD finger transcription factor | 1 | Chr11:18475119–18484515 (+) | 9.135e-11 | |
| Glyma.11G171500 | hypothetical protein | NA | 1 | Chr11:18629660–18631015 (+) | 9.135e-11 | |
| Glyma.11G171800 | hypothetical protein | NA | 1 | Chr11:18663180–18666591 (-) | 9.135e-11 | |
| Glyma.11G172200 | hypothetical protein | AT1G07110:F2KP:fructose-2,6-bisphosphatase | 1 | Chr11:18702580–18708310 (+) | 9.135e-11 | |
| Glyma.11G174000 | hypothetical protein | NA | 1 | Chr11:18995245–18996690 (-) | 1.863e-12 | |
| Glyma.11G174300 | hypothetical protein | NA | 1 | Chr11:19068680–19070857 (+) | 1.863e-12 | |
| Glyma.11G182600 | hypothetical protein | AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein | 1 | Chr11:24998933–25003549 (-) | 6.085e-11 | |
| Glyma.11G241000 | hypothetical protein | AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein | 1 | Chr11:33526493–33531210 (+) | 8.345e-11 | |
| Glyma.12G035600 | hypothetical protein | AT5G45600:GAS41:YEATS family protein | 1 | Chr12:2597690–2600977 (+) | 9.413e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 4.583e-11 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 4.583e-11 | |
| Glyma.12G198700 | hypothetical protein | AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein | 1 | Chr12:36001658–36004086 (+) | 5.668e-11 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 6.192e-11 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 6.192e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.02e-13 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 3.167e-12 | |
| Glyma.12G228000 | hypothetical protein | AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein | 1 | Chr12:38789187–38797498 (+) | 1.211e-11 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 1.686e-12 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 1.258e-11 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 2.171e-11 | |
| Glyma.13G203600 | hypothetical protein | AT5G13490:AAC2:ADP/ATP carrier 2 | 1 | Chr13:31753843–31756013 (-) | 7.377e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 2.171e-11 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 4.3e-12 | |
| Glyma.14G068500 | hypothetical protein | NA | 1 | Chr14:5741909–5745574 (-) | 4.401e-11 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 2.479e-12 | |
| Glyma.14G133600 | hypothetical protein | AT4G31390:ACDO1:Protein kinase superfamily protein | 1 | Chr14:23182134–23193763 (+) | 2.284e-11 | |
| Glyma.14G148800 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr14:32154755–32157298 (+) | 3.187e-12 | |
| Glyma.14G204400 | hypothetical protein | AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 | 1 | Chr14:46936057–46943868 (-) | 7.709e-11 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 7.877e-14 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.51e-12 | |
| Glyma.16G057600 | hypothetical protein | AT3G27170:CLC-B:chloride channel B | 1 | Chr16:5650591–5655830 (+) | 1.868e-12 | |
| Glyma.16G063600 | hypothetical protein | NA | 1 | Chr16:6255512–6260421 (+) | 6.653e-14 | |
| Glyma.16G066200 | hypothetical protein | AT5G40650:SDH2-2:succinate dehydrogenase 2-2__AT3G27380:SDH2-1:succinate dehydrogenase 2-1 | 1 | Chr16:6576967–6580036 (-) | 4.867e-11 | |
| Glyma.16G069300 | hypothetical protein | AT3G01600:NAC044:NAC domain containing protein 44 | 1 | Chr16:6914905–6920531 (+) | 2.729e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 2.606e-11 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 2.94e-11 | |
| Glyma.16G121500 | hypothetical protein | NA | 1 | Chr16:27007186–27010856 (+) | 7.772e-12 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 7.685e-11 | |
| Glyma.18G111800 | hypothetical protein | AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein | 1 | Chr18:13278653–13284970 (+) | 1.364e-12 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 2.784e-11 | |
| Glyma.18G251900 | hypothetical protein | AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… | 1 | Chr18:53855786–53862322 (-) | 6.264e-12 | |
| Glyma.18G266100 | hypothetical protein | NA | 1 | Chr18:55052591–55056489 (-) | 5.445e-11 | |
| Glyma.18G266500 | hypothetical protein | NA | 1 | Chr18:55088284–55091427 (-) | 2.57e-11 | |
| Glyma.19G006900 | hypothetical protein | AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr19:686556–692466 (-) | 9.929e-12 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 9.628e-13 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 9.628e-13 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 1.878e-13 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 1 | Chr20:34984922–34988496 (+) | 1.346e-11 |