Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52338

Metabolite ID
P52338
Deionized mass
363.2426 Da
Average m/z
364.2508
Average RT
28.5726
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
96
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

96 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.022e-12
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)5.578e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)6.93e-12
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 3Chr20:34757381–34771672 (+)2.272e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)2.305e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.781e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.781e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)1.508e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.684e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.105e-13
Glyma.14G210600 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 2Chr14:47557927–47561596 (-)7.525e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.022e-12
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 2Chr20:34796301–34808587 (+)3.93e-12
Glyma.20G105900 hypothetical protein AT2G16990:AT2G16990:Major facilitator superfamily protein 2Chr20:34832271–34839955 (-)4.68e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.5e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.782e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.696e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)4.412e-13
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)8.387e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)8.387e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.986e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.72e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.755e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.903e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)6.09e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)6.09e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)6.09e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.937e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.925e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.419e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.369e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.438e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.438e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.438e-12
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)2.985e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)7.897e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.781e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.781e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.586e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.781e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.819e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.332e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.332e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.423e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.392e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.767e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.405e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.405e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.404e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.404e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.495e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.951e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.066e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)5.893e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.523e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.548e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.548e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.548e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.982e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.928e-11
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)2.56e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.87e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.778e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.684e-12
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)1.275e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.105e-13
Glyma.14G208900 hypothetical protein AT1G17200:AT1G17200:Uncharacterized protein family (UPF0497) 1Chr14:47451105–47454596 (-)8.202e-11
Glyma.14G209000 hypothetical protein NA 1Chr14:47461788–47463395 (+)8.202e-11
Glyma.14G209100 hypothetical protein NA 1Chr14:47464224–47465243 (+)8.202e-11
Glyma.14G209800 hypothetical protein AT5G17240:SDG40:SET domain group 40 1Chr14:47508042–47511868 (+)8.202e-11
Glyma.14G209900 hypothetical protein NA 1Chr14:47515899–47521687 (+)8.203e-11
Glyma.14G211000 IDH1 AT1G65930:cICDH:cytosolic NADP+-dependent isocitrate dehydrogenase 1Chr14:47592207–47597473 (+)2.432e-11
Glyma.14G211100 hypothetical protein AT1G65960:GAD2:glutamate decarboxylase 2 1Chr14:47603425–47609079 (+)2.432e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.377e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.628e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.377e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.377e-12
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)5.578e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)5.578e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)6.88e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.65e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.65e-14
Glyma.17G112200 hypothetical protein AT5G52580:AT5G52580:RabGAP/TBC domain-containing protein 1Chr17:8837513–8848411 (+)4.693e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)6.274e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)6.542e-11
Glyma.18G027300 hypothetical protein NA 1Chr18:2049280–2053959 (-)6.278e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)3.61e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.197e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)5.417e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.868e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.152e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.295e-11
Glyma.20G104600 hypothetical protein NA 1Chr20:34682410–34684475 (-)2.64e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)2.809e-11
Glyma.20G105600 hypothetical protein AT2G17033:AT2G17033:pentatricopeptide (PPR) repeat-containing protein 1Chr20:34818550–34820435 (-)3.93e-12
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 1Chr20:34868954–34885305 (-)3.831e-12