Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52261

Metabolite ID
P52261
Deionized mass
508.1044 Da
Average m/z
509.1111
Average RT
28.5165
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.002e-11
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.419e-13
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)7.425e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.001e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.149e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.874e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)6.215e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)4.798e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.014e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.274e-11
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)5.186e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.391e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.937e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.284e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.245e-17
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.001e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.001e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.001e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.001e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.703e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.703e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.024e-13
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)7.426e-14
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)7.426e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.171e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.171e-15
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.171e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.171e-15
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)8.599e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.871e-12
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)8.599e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.916e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.077e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.134e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.134e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.134e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.468e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.486e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.029e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)9.574e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.339e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.335e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.335e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)7.523e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)1.002e-11
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)8.047e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.416e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)2.726e-11