Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52065

Metabolite ID
P52065
Deionized mass
465.3083 Da
Average m/z
466.3132
Average RT
28.3510
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
148
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

148 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.827e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.936e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.797e-16
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)3.611e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.744e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.629e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.836e-11
Glyma.08G338900 hypothetical protein NA 2Chr08:45536950–45543029 (-)2.897e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.81e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.81e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.81e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.573e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)2.211e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.655e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)3.629e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.936e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.853e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.089e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.766e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)3.099e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.679e-16
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.717e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.998e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)7.567e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.983e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.983e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.983e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.983e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.983e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.983e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.983e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.443e-14
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.711e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)9.648e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.961e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.672e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.124e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.572e-12
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)3.247e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.668e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.166e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.406e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.011e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)9.223e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)9.223e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)9.223e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.175e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.518e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.518e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.216e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.913e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.913e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.913e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.354e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.906e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.046e-15
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.542e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.63e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.317e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.317e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.94e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.797e-16
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.797e-16
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.629e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)7.721e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.836e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.836e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.836e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.836e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.687e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.687e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.265e-14
Glyma.08G220200 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr08:17889781–17898867 (+)1.945e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)3.611e-14
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)3.611e-14
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)4.605e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)4.605e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.434e-11
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)2.307e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.881e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.376e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.641e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.81e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.81e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.81e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.809e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.809e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.927e-13
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)2.456e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)2.456e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.51e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.713e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.713e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.713e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.713e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.055e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.55e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.883e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)1.309e-11
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)7.535e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)7.535e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.35e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.35e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.02e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.02e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)7.353e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)9.164e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.665e-16
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)1.068e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.911e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)1.639e-11
Glyma.13G199800 hypothetical protein NA 1Chr13:31353786–31356378 (+)2.965e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.751e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.751e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.751e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.311e-14
Glyma.13G204700 hypothetical protein AT1G11720:SS3:starch synthase 3 1Chr13:31872482–31883107 (-)2.508e-11
Glyma.13G204800 hypothetical protein AT4G04640:ATPC1:ATPase, F1 complex, gamma subunit protein 1Chr13:31885462–31887911 (-)2.508e-11
Glyma.13G204900 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr13:31888324–31898942 (-)2.508e-11
Glyma.14G087700 hypothetical protein NA 1Chr14:7856127–7866458 (-)4.766e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.716e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.601e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.243e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.733e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.393e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)7.703e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.211e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)7.051e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.312e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)5.116e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)4.392e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)8.162e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.744e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.835e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.782e-13
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)8.416e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)8.416e-11
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 1Chr18:5080060–5083756 (-)5.528e-11
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)5.528e-11
Glyma.18G057900 hypothetical protein NA 1Chr18:5092695–5097651 (-)5.528e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)6.717e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.101e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.443e-14
Glyma.18G237300 hypothetical protein AT4G01320:ATSTE24:Peptidase family M48 family protein 1Chr18:52606766–52614841 (-)2.324e-11
Glyma.18G237700 hypothetical protein AT4G01280:AT4G01280:Homeodomain-like superfamily protein 1Chr18:52631633–52637246 (-)2.95e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.675e-16
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.8e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)4.088e-13