P52008
Metabolite ID
P52008
Deionized mass
556.3508 Da
Average m/z
557.3556
Average RT
28.2666
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
Loading GWAS records…
Loading Manhattan plot…
This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
Loading Q–Q plot…
Loading GWAS summary…
Associated genes
121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 4 | Chr03:169480–172727 (+) | 3.861e-13 | |
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 1.079e-12 | |
| Glyma.06G305700 | hypothetical protein | AT2G05710:ACO3:aconitase 3 | 3 | Chr06:49451501–49461369 (-) | 1.884e-11 | |
| Glyma.09G053800 | hypothetical protein | NA | 3 | Chr09:4737413–4755632 (-) | 5.222e-12 | |
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 3 | Chr16:30652378–30659548 (+) | 8.187e-14 | |
| Glyma.16G147900 | hypothetical protein | NA | 3 | Chr16:30864919–30872425 (+) | 1.675e-13 | |
| Glyma.16G196800 | hypothetical protein | AT5G07250:RBL3:RHOMBOID-like protein 3 | 3 | Chr16:35831912–35835153 (+) | 1.051e-11 | |
| Glyma.03G018800 | hypothetical protein | AT2G45680:TCP9:TCP family transcription factor | 2 | Chr03:1875182–1876855 (+) | 9.096e-12 | |
| Glyma.09G282900 | hypothetical protein | AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 | 2 | Chr09:49863377–49871270 (+) | 7.434e-11 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 1.367e-13 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 1.367e-13 | |
| Glyma.14G201600 | hypothetical protein | NA | 2 | Chr14:46703283–46706500 (+) | 4.424e-13 | |
| Glyma.16G145100 | hypothetical protein | NA | 2 | Chr16:30578388–30581421 (-) | 8.187e-14 | |
| Glyma.16G196900 | hypothetical protein | NA | 2 | Chr16:35841279–35846894 (-) | 2.857e-12 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 2 | Chr19:1123637–1130946 (+) | 8.567e-12 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 1.079e-12 | |
| Glyma.01G010400 | SLTI248 | DEAD-box RNA helicase | AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein | 1 | Chr01:1009200–1013846 (+) | 6.157e-11 |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 5.233e-13 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 3.117e-16 | |
| Glyma.03G018600 | hypothetical protein | AT2G45695:AT2G45695:Ubiquitin related modifier 1 | 1 | Chr03:1859210–1862572 (-) | 2.419e-12 | |
| Glyma.03G019600 | hypothetical protein | AT2G45640:SAP18:SIN3 associated polypeptide P18 | 1 | Chr03:2007617–2009871 (+) | 7.024e-12 | |
| Glyma.03G021400 | hypothetical protein | AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein | 1 | Chr03:2202325–2234931 (+) | 5.702e-11 | |
| Glyma.03G022200 | hypothetical protein | NA | 1 | Chr03:2326204–2327764 (+) | 8.945e-12 | |
| Glyma.03G124500 | hypothetical protein | NA | 1 | Chr03:33758928–33762195 (+) | 3.246e-11 | |
| Glyma.03G169700 | hypothetical protein | AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… | 1 | Chr03:38442950–38448706 (+) | 9.833e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 8.875e-12 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 6.679e-11 | |
| Glyma.05G182100 | hypothetical protein | NA | 1 | Chr05:37003489–37004855 (-) | 3.578e-12 | |
| Glyma.05G182500 | hypothetical protein | AT5G65210:TGA1:bZIP transcription factor family protein | 1 | Chr05:37029299–37037313 (+) | 6.32e-11 | |
| Glyma.05G182900 | hypothetical protein | NA | 1 | Chr05:37056753–37057349 (-) | 6.32e-11 | |
| Glyma.05G183100 | hypothetical protein | AT5G64940:ATH13:ABC2 homolog 13 | 1 | Chr05:37059525–37070146 (-) | 6.32e-11 | |
| Glyma.05G219200 | hypothetical protein | NA | 1 | Chr05:39875137–39879113 (-) | 3.043e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 2.824e-11 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 4.52e-11 | |
| Glyma.06G085200 | hypothetical protein | NA | 1 | Chr06:6540849–6545557 (+) | 9.296e-11 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 6.082e-11 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 6.082e-11 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 6.082e-11 | |
| Glyma.06G275800 | hypothetical protein | AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta | 1 | Chr06:46677753–46682900 (-) | 1.549e-12 | |
| Glyma.06G285200 | hypothetical protein | AT2G31060:EMB2785:elongation factor family protein | 1 | Chr06:47380397–47390651 (+) | 7.081e-14 | |
| Glyma.06G289900 | hypothetical protein | AT2G20590:AT2G20590:Reticulon family protein | 1 | Chr06:47861573–47865518 (-) | 8.102e-11 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 9.694e-15 | |
| Glyma.06G291800 | hypothetical protein | NA | 1 | Chr06:48044194–48047197 (-) | 2.758e-14 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 9.694e-15 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 9.694e-15 | |
| Glyma.06G292200 | hypothetical protein | AT5G44290:AT5G44290:Protein kinase superfamily protein | 1 | Chr06:48100578–48107433 (-) | 2.758e-14 | |
| Glyma.06G293600 | hypothetical protein | AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein | 1 | Chr06:48251255–48252791 (+) | 3.269e-12 | |
| Glyma.06G305200 | hypothetical protein | AT3G21690:AT3G21690:MATE efflux family protein | 1 | Chr06:49420013–49426780 (-) | 3.556e-11 | |
| Glyma.06G305300 | hypothetical protein | NA | 1 | Chr06:49431590–49435985 (-) | 1.884e-11 | |
| Glyma.06G305600 | hypothetical protein | NA | 1 | Chr06:49446542–49450635 (-) | 1.884e-11 | |
| Glyma.06G315100 | hypothetical protein | AT5G04930:ALA1:aminophospholipid ATPase 1 | 1 | Chr06:50401945–50408153 (+) | 1.783e-11 | |
| Glyma.07G068300 | hypothetical protein | AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase | 1 | Chr07:6169729–6172231 (+) | 7.348e-11 | |
| Glyma.07G071800 | hypothetical protein | AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein | 1 | Chr07:6523253–6526707 (+) | 3.388e-12 | |
| Glyma.07G243600 | hypothetical protein | NA | 1 | Chr07:42336266–42345196 (+) | 7.274e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 2.069e-15 | |
| Glyma.08G239500 | hypothetical protein | AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr08:20444715–20447665 (-) | 3.601e-12 | |
| Glyma.09G011700 | hypothetical protein | NA | 1 | Chr09:894858–897607 (-) | 9.868e-11 | |
| Glyma.09G019400 | hypothetical protein | AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein | 1 | Chr09:1518046–1520807 (+) | 3.84e-11 | |
| Glyma.09G052400 | hypothetical protein | AT1G31040:AT1G31040:PLATZ transcription factor family protein | 1 | Chr09:4583416–4589291 (-) | 1.572e-11 | |
| Glyma.09G052700 | hypothetical protein | AT1G31120:KUP10:K+ uptake permease 10 | 1 | Chr09:4617652–4626364 (+) | 2.01e-11 | |
| Glyma.09G058900 | hypothetical protein | NA | 1 | Chr09:5397968–5404650 (-) | 3.321e-11 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 6.539e-11 | |
| Glyma.09G068800 | hypothetical protein | AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein | 1 | Chr09:6979166–6993110 (-) | 2.004e-12 | |
| Glyma.09G069400 | hypothetical protein | NA | 1 | Chr09:7055066–7058933 (+) | 2.649e-13 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 6.452e-11 | |
| Glyma.11G127100 | hypothetical protein | AT1G06040:STO:B-box zinc finger family protein | 1 | Chr11:9656242–9659517 (+) | 9.554e-13 | |
| Glyma.11G127200 | hypothetical protein | AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein | 1 | Chr11:9660434–9665570 (-) | 9.554e-13 | |
| Glyma.11G127300 | hypothetical protein | AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein | 1 | Chr11:9667918–9671917 (-) | 9.554e-13 | |
| Glyma.12G008300 | hypothetical protein | AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein | 1 | Chr12:613939–617457 (+) | 9.568e-12 | |
| Glyma.12G049300 | hypothetical protein | NA | 1 | Chr12:3538428–3539170 (-) | 3.078e-13 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.28e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 1.28e-12 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 8.885e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 1.367e-13 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 1.367e-13 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 2.765e-13 | |
| Glyma.13G142200 | hypothetical protein | AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 | 1 | Chr13:25483702–25502265 (+) | 4.447e-12 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 5.807e-11 | |
| Glyma.14G066800 | hypothetical protein | NA | 1 | Chr14:5511222–5513114 (+) | 3.559e-11 | |
| Glyma.14G075900 | hypothetical protein | NA | 1 | Chr14:6362111–6364010 (-) | 6.433e-14 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 4.424e-13 | |
| Glyma.14G201800 | hypothetical protein | AT5G58390:AT5G58390:Peroxidase superfamily protein | 1 | Chr14:46728613–46733836 (+) | 4.5e-11 | |
| Glyma.14G204400 | hypothetical protein | AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 | 1 | Chr14:46936057–46943868 (-) | 2.723e-11 | |
| Glyma.15G047100 | hypothetical protein | AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) | 1 | Chr15:3736217–3746037 (+) | 1.373e-12 | |
| Glyma.15G047800 | hypothetical protein | AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein | 1 | Chr15:3777567–3783739 (+) | 1.373e-12 | |
| Glyma.15G048200 | hypothetical protein | AT1G25260:AT1G25260:Ribosomal protein L10 family protein | 1 | Chr15:3812816–3815263 (+) | 2.848e-13 | |
| Glyma.15G048800 | hypothetical protein | AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family | 1 | Chr15:3852038–3855379 (+) | 1.571e-14 | |
| Glyma.15G049000 | hypothetical protein | NA | 1 | Chr15:3866108–3867740 (+) | 2.189e-12 | |
| Glyma.15G070100 | hypothetical protein | AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 1 | Chr15:5355553–5364428 (+) | 6.002e-14 | |
| Glyma.15G071600 | hypothetical protein | AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein | 1 | Chr15:5481672–5488866 (-) | 6.002e-14 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 1.717e-18 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.827e-16 | |
| Glyma.15G141100 | hypothetical protein | NA | 1 | Chr15:11554310–11555089 (+) | 5.699e-11 | |
| Glyma.16G050500 | AFB3B | auxin signaling F-box 3 protein | AT3G26810:AFB2:auxin signaling F-box 2 | 1 | Chr16:4853237–4856710 (+) | 3.809e-12 |
| Glyma.16G051100 | hypothetical protein | NA | 1 | Chr16:4896279–4898219 (-) | 7.881e-11 | |
| Glyma.16G115500 | hypothetical protein | NA | 1 | Chr16:25622503–25630816 (+) | 3.02e-11 | |
| Glyma.16G116200 | hypothetical protein | AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein | 1 | Chr16:25892277–25904773 (+) | 4.132e-12 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 5.546e-13 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 4.035e-13 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 5.505e-13 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 8.15e-11 | |
| Glyma.16G121500 | hypothetical protein | NA | 1 | Chr16:27007186–27010856 (+) | 3.266e-11 | |
| Glyma.16G144700 | hypothetical protein | AT5G66960:AT5G66960:Prolyl oligopeptidase family protein | 1 | Chr16:30514629–30519598 (+) | 4.832e-12 | |
| Glyma.16G145300 | hypothetical protein | AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 | 1 | Chr16:30604586–30608656 (+) | 6.555e-11 | |
| Glyma.16G145500 | hypothetical protein | AT2G39200:MLO12:Seven transmembrane MLO family protein | 1 | Chr16:30630177–30636253 (+) | 2.38e-11 | |
| Glyma.16G147000 | hypothetical protein | NA | 1 | Chr16:30773803–30777822 (-) | 7.907e-13 | |
| Glyma.16G147400 | hypothetical protein | NA | 1 | Chr16:30817535–30821568 (+) | 6.45e-11 | |
| Glyma.18G099600 | hypothetical protein | AT4G27040:VPS22:EAP30/Vps36 family protein | 1 | Chr18:10453308–10458891 (-) | 1.129e-11 | |
| Glyma.18G099700 | hypothetical protein | AT5G54860:AT5G54860:Major facilitator superfamily protein | 1 | Chr18:10459970–10464888 (-) | 1.174e-11 | |
| Glyma.18G099900 | hypothetical protein | AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… | 1 | Chr18:10471443–10475076 (+) | 1.129e-11 | |
| Glyma.18G100200 | hypothetical protein | NA | 1 | Chr18:10512806–10522231 (+) | 1.129e-11 | |
| Glyma.18G202600 | FAD7-1 | omega-3 fatty acid desaturase | NA | 1 | Chr18:48365045–48368299 (-) | 5.868e-11 |
| Glyma.18G299100 | hypothetical protein | AT5G13420:TRA2:Aldolase-type TIM barrel family protein | 1 | Chr18:57674222–57678396 (+) | 3.602e-11 | |
| Glyma.18G301900 | hypothetical protein | AT5G13190:GILP:GSH-induced LITAF domain protein | 1 | Chr18:57953323–57956369 (-) | 6.745e-11 | |
| Glyma.19G006900 | hypothetical protein | AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr19:686556–692466 (-) | 1.827e-12 | |
| Glyma.19G009400 | hypothetical protein | AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein | 1 | Chr19:885045–893253 (+) | 1.816e-13 | |
| Glyma.19G011600 | hypothetical protein | NA | 1 | Chr19:1111789–1116419 (+) | 8.567e-12 | |
| Glyma.19G011800 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1134716–1143232 (+) | 6.132e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 1.307e-15 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 1.307e-15 | |
| Glyma.20G109800 | hypothetical protein | AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr20:35213258–35219502 (+) | 2.942e-11 |