Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51429

Metabolite ID
P51429
Deionized mass
478.2874 Da
Average m/z
479.2957
Average RT
27.8063
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.827e-12
Glyma.02G121500 hypothetical protein NA 1Chr02:12065640–12082937 (+)1.347e-12
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)3.912e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.11e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)8.752e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)6.549e-12
Glyma.04G245000 hypothetical protein NA 1Chr04:51252430–51253384 (-)6.866e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.413e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)7.372e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.265e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.585e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.039e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.773e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.076e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.837e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.837e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.419e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)7.565e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.563e-11
Glyma.09G050800 AAH2 AT4G20070:AAH:allantoate amidohydrolase 1Chr09:4413615–4418223 (-)4.859e-12
Glyma.09G051100 hypothetical protein NA 1Chr09:4454515–4461881 (+)7.187e-12
Glyma.09G051500 hypothetical protein AT3G06960:PDE320:pigment defective 320 1Chr09:4488096–4493102 (-)7.187e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.363e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.477e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.096e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.236e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.26e-15
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.638e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.638e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.638e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.025e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.551e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.551e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.551e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.469e-12
Glyma.17G110600 hypothetical protein AT2G11000:MAK10:MAK10 homologue 1Chr17:8660704–8669300 (+)4.031e-11
Glyma.17G112200 hypothetical protein AT5G52580:AT5G52580:RabGAP/TBC domain-containing protein 1Chr17:8837513–8848411 (+)1.151e-13
Glyma.17G118500 hypothetical protein NA 1Chr17:9376920–9378047 (-)7.121e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)3.017e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.666e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.225e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.225e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)4.002e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.866e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.255e-11