Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51189

Metabolite ID
P51189
Deionized mass
362.2429 Da
Average m/z
363.2502
Average RT
27.5385
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 6Chr19:3335896–3343744 (+)1.067e-17
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)9.382e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.383e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.38e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.605e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)7.967e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)4.488e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.94e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.067e-17
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.253e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.217e-14
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.097e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.957e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.701e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.451e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.45e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)4.359e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.162e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.383e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.383e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.383e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.383e-12
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)9.186e-13
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)9.186e-13
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)9.186e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.598e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.598e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.598e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.598e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.197e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.641e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.268e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.268e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.845e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.845e-13
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)2.885e-12
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)8.648e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.38e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.605e-13
Glyma.16G105300 hypothetical protein AT4G19120:ERD3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:21299154–21305321 (-)2.805e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.967e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)8.52e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.376e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.376e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)9.382e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.989e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.989e-13
Glyma.19G026900 hypothetical protein NA 1Chr19:3331196–3333961 (-)2.983e-11
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)1.266e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)1.93e-11
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)1.26e-11
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)4.941e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.707e-13