Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50865

Metabolite ID
P50865
Deionized mass
305.2465 Da
Average m/z
306.2527
Average RT
27.2145
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.732e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)2.096e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.028e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)2.64e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.256e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.988e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.682e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)3.937e-16
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)3.937e-16
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)7.749e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.053e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)6.738e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.254e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.732e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.732e-11
Glyma.08G294100 hypothetical protein AT1G59650:CW14:CW14 protein (DUF1336) 1Chr08:40942975–40947622 (+)3.065e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.132e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.43e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.069e-12
Glyma.12G007700 hypothetical protein NA 1Chr12:563263–567108 (-)5.182e-11
Glyma.12G007800 hypothetical protein NA 1Chr12:572469–583974 (+)3.177e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.614e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.614e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.191e-11
Glyma.14G004600 hypothetical protein AT5G48230:ACAT2:acetoacetyl-CoA thiolase 2 1Chr14:390064–394491 (+)2.698e-13
Glyma.14G017600 hypothetical protein AT5G55280:FTSZ1-1:homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 1Chr14:1257629–1260935 (+)3.551e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.006e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.942e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)9.336e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)9.336e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)9.336e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.76e-11
Glyma.16G038900 hypothetical protein AT3G03790:AT3G03790:ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein 1Chr16:3666547–3676052 (+)2.387e-14
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)6.494e-13
Glyma.16G040700 hypothetical protein AT3G03890:AT3G03890:FMN binding protein 1Chr16:3825551–3830340 (-)2.174e-11
Glyma.16G041000 hypothetical protein AT5G18140:AT5G18140:Chaperone DnaJ-domain superfamily protein 1Chr16:3852109–3856099 (+)2.174e-11
Glyma.16G041200 gdh1 AT3G03910:GDH3:glutamate dehydrogenase 3__AT5G18170:GDH1:glutamate dehydrogenase 1 1Chr16:3861427–3869280 (+)2.174e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)1.161e-13
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)3.522e-15
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)3.522e-15
Glyma.16G042600 hypothetical protein AT5G18230:AT5G18230:transcription regulator NOT2/NOT3/NOT5 family protein 1Chr16:3964264–3976083 (-)4.276e-16
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.101e-11
Glyma.20G236700 hypothetical protein AT3G05545:AT3G05545:RING/U-box superfamily protein 1Chr20:46886326–46894385 (+)6.2e-11
Glyma.20G237300 hypothetical protein AT5G27830:AT5G27830:folate receptor family protein 1Chr20:46928669–46932256 (+)9.883e-11
Glyma.20G237600 hypothetical protein NA 1Chr20:46943062–46944735 (+)9.883e-11