Overview Annotation GWAS Evidence Associated genes

P50718

Metabolite ID
P50718
Deionized mass
387.2449 Da
Average m/z
388.2513
Average RT
27.1002
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
157
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

157 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.642e-13
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)9.123e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.359e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.156e-18
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)7.422e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)1.971e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)4.03e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)9.843e-15
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)1.702e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.02e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.782e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.119e-17
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)2.759e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.115e-11
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)1.172e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.531e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.33e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.88e-16
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.455e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.359e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.447e-17
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 2Chr20:35134138–35152085 (-)3.257e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)6.908e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)1.702e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)1.702e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.5e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.355e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.548e-13
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)3.729e-13
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)7.364e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)9.751e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.234e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.318e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.331e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.504e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.504e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.407e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.991e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.991e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.991e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)5.35e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.266e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.689e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.874e-16
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)8.665e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.062e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.269e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.138e-18
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.595e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.691e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.692e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.691e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.241e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.361e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.361e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.36e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.021e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.021e-13
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)2.261e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.643e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.265e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.866e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.02e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.02e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.02e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.02e-12
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)7.066e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)7.066e-11
Glyma.08G142900 hypothetical protein AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein 1Chr08:10869437–10872439 (+)5.265e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)4.707e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)1.606e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.824e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.853e-17
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.648e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.839e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)7.415e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.278e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)9.691e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)9.691e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.839e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.839e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.374e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)6.431e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)5.674e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.137e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.351e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.351e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.351e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.351e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.541e-17
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.541e-17
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.635e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.635e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.051e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.154e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.154e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.296e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.932e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.119e-17
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.359e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.849e-13
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)2.461e-12
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)5.729e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)4.448e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.245e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.115e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.411e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.971e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)4.452e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.971e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.381e-12
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.172e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.676e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.204e-16
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)3.269e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)3.269e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.408e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.33e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)6.239e-12
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)6.239e-12
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)2.475e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.88e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.582e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.292e-14
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)4.804e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)7.597e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.455e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.856e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.231e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.47e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.551e-19
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.997e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)8.637e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)8.637e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.79e-15
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)4.344e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.983e-13
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)2.703e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.913e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.844e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.825e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.977e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)1.726e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.746e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.746e-14
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.552e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)3.923e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)8.508e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)5.615e-14
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.045e-15
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)2.844e-13
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)2.705e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)9.724e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.101e-12
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)3.257e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)2.121e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.087e-12