Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50556

Metabolite ID
P50556
Deionized mass
106.0772 Da
Average m/z
107.0846
Average RT
26.9803
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 6Chr17:36771760–36778616 (-)1.227e-13
Glyma.06G186000 hypothetical protein NA 4Chr06:16179587–16193692 (+)2.077e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.846e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 3Chr17:36319785–36329259 (-)1.337e-13
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)2.296e-15
Glyma.10G079800 hypothetical protein NA 2Chr10:9223520–9228511 (-)1.168e-11
Glyma.10G081200 hypothetical protein NA 2Chr10:9600771–9603988 (-)3.537e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.337e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.13e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)2.716e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.548e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.696e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.798e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.209e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.418e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.048e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.918e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.037e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4e-13
Glyma.06G186400 hypothetical protein AT1G74910:AT1G74910:ADP-glucose pyrophosphorylase family protein 1Chr06:16225061–16230826 (+)4.892e-11
Glyma.06G186800 hypothetical protein AT3G48160:DEL1:DP-E2F-like 1 1Chr06:16242993–16252777 (-)4.892e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.201e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.201e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.906e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.715e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.715e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)4.347e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.488e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.168e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.168e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)7.605e-11
Glyma.10G079900 hypothetical protein AT3G11650:NHL2:NDR1/HIN1-like 2 1Chr10:9245085–9246282 (-)1.584e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.168e-11
Glyma.10G080100 hypothetical protein AT2G44860:AT2G44860:Ribosomal protein L24e family protein 1Chr10:9295934–9296863 (-)1.584e-11
Glyma.10G080200 hypothetical protein NA 1Chr10:9350912–9352018 (+)1.584e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.562e-12
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)4.882e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)4.882e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)4.882e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.562e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.417e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.417e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.417e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)1.581e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.377e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.377e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.157e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.186e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.661e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.272e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.272e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.272e-11
Glyma.13G293600 hypothetical protein NA 1Chr13:39321355–39324767 (+)8.888e-12
Glyma.13G293800 hypothetical protein NA 1Chr13:39343173–39346777 (+)2.471e-12
Glyma.14G205100 hypothetical protein NA 1Chr14:47020646–47026852 (+)1.507e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.495e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.897e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.495e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.495e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.738e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.846e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.85e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.999e-11
Glyma.17G212200 hypothetical protein NA 1Chr17:35064075–35065120 (-)9.983e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.016e-11
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)1.162e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)2.113e-12
Glyma.17G218000 hypothetical protein AT4G31890:AT4G31890:ARM repeat superfamily protein 1Chr17:36783362–36786891 (+)2.104e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)1.032e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.151e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.863e-11