Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50398

Metabolite ID
P50398
Deionized mass
370.1572 Da
Average m/z
371.1624
Average RT
26.8680
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 6Chr18:51471540–51498344 (+)1.117e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.834e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.817e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.931e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.684e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)3.16e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.834e-12
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)1.031e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)9.174e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)9.174e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)9.174e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)9.174e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)9.174e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.067e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)9.412e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.015e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.286e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.18e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.134e-12
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.407e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)5.482e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.507e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.507e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.507e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.84e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.35e-11
Glyma.10G156300 hypothetical protein AT3G05210:ERCC1:nucleotide repair protein 1Chr10:39053531–39057116 (-)3.449e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)1.029e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)6.233e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.381e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.381e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.309e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.309e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.472e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.472e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.087e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.331e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.087e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.087e-13
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)8.403e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.671e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.156e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.156e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)6.168e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.506e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.392e-11
Glyma.20G234500 hypothetical protein AT3G05380:ALY2:ALWAYS EARLY 2 1Chr20:46698301–46713330 (+)7.275e-11
Glyma.20G234600 hypothetical protein AT1G09020:SNF4:sucrose nonfermenting-like protein 1Chr20:46716599–46733339 (-)7.275e-11
Glyma.20G234700 hypothetical protein NA 1Chr20:46737685–46740853 (-)7.275e-11