Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50371

Metabolite ID
P50371
Deionized mass
407.1595 Da
Average m/z
408.1705
Average RT
26.8535
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)1.697e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.823e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.806e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)2.09e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.09e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.297e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.298e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.573e-14
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)1.697e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)1.237e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.155e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.331e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)1.476e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.187e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)9.561e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.264e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.427e-13
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.258e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.695e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.011e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.647e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.042e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.042e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.195e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)6.757e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)2.865e-13
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)9.005e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)7.401e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.531e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.531e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.531e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.531e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.374e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.009e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.279e-11
Glyma.12G095500 hypothetical protein AT3G44150:AT3G44150:Expp1 protein 1Chr12:8023570–8027770 (-)1.741e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.09e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.681e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.681e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.297e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.114e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.509e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.114e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.114e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.261e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.468e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.86e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.806e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.806e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.71e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.482e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)9.873e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)2.291e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.492e-11
Glyma.16G158300 hypothetical protein AT5G43140:AT5G43140:Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 1Chr16:31859405–31862567 (+)3.232e-11
Glyma.16G158400 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr16:31863760–31867327 (-)3.232e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.421e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.077e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.315e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.315e-11