Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49933

Metabolite ID
P49933
Deionized mass
423.2591 Da
Average m/z
424.2675
Average RT
26.5378
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
107
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

107 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)3.653e-16
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)4.13e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.557e-17
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)5.118e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.857e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.359e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.299e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)8.912e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.687e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.091e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.371e-16
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)4.461e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)8.639e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.494e-19
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)8.166e-15
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.319e-17
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.319e-17
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.379e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)5.118e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.671e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.869e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.729e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)4.097e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)4.097e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)4.097e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)4.097e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)4.097e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)4.097e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)4.097e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.299e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.792e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.792e-14
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.461e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.243e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.295e-13
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)8.37e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.192e-12
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)4.841e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.711e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.457e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.556e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.605e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.605e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.605e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.349e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.552e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.546e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.825e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.825e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)5.051e-11
Glyma.07G186200 hypothetical protein NA 1Chr07:35379080–35379902 (+)8.203e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)2.962e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.176e-14
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.176e-14
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)4.373e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.688e-14
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)3.014e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)3.014e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.253e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.596e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.328e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.951e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.911e-15
Glyma.09G212100 hypothetical protein AT4G19040:EDR2:ENHANCED DISEASE RESISTANCE 2 1Chr09:43601727–43616030 (-)7.766e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.19e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)4.815e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.127e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.127e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.477e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.477e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.094e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.095e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.852e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.34e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)7.87e-12
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)3.34e-11
Glyma.13G149800 hypothetical protein AT2G36580:AT2G36580:Pyruvate kinase family protein 1Chr13:26329040–26335075 (-)2.175e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.895e-11
Glyma.14G062900 hypothetical protein AT1G07070:AT1G07070:Ribosomal protein L35Ae family protein__AT1G41880:AT1G41880:Ribosomal protein L35Ae family protein 1Chr14:5110718–5113586 (-)9.384e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.681e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)5.493e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.091e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.746e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.405e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.515e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.143e-13
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)2.497e-13
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)6.654e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.759e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.359e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.359e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.752e-16
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.909e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.504e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.454e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.837e-12
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)3.164e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)2.628e-11
Glyma.19G009900 hypothetical protein NA 1Chr19:923053–937826 (-)3.21e-13
Glyma.19G011000 hypothetical protein NA 1Chr19:1055394–1060028 (+)7.136e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.494e-19
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)4.15e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.848e-12
Glyma.19G216500 hypothetical protein AT3G62390:TBL6:TRICHOME BIREFRINGENCE-LIKE 6 1Chr19:46951591–46954520 (+)7.066e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.406e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.69e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.659e-16