Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49932

Metabolite ID
P49932
Deionized mass
635.4266 Da
Average m/z
636.4317
Average RT
26.5373
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 8Chr18:51471540–51498344 (+)1.134e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.702e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.535e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.124e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.867e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.883e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.762e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)9.603e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.037e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.304e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)3.809e-11
Glyma.03G145900 hypothetical protein AT5G06700:AT5G06700:trichome birefringence-like protein (DUF828) 1Chr03:36127816–36131230 (-)6.962e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)8.498e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.238e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.65e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.702e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.835e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.049e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.178e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.612e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.253e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.072e-16
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.546e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)4.609e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.902e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.865e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.865e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.535e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.535e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.535e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.535e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.574e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.414e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.781e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.781e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.781e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.781e-11
Glyma.10G156300 hypothetical protein AT3G05210:ERCC1:nucleotide repair protein 1Chr10:39053531–39057116 (-)5.618e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.744e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)7.541e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.476e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.486e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.476e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.476e-13
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)6.341e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.641e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.863e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.663e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.942e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.186e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.942e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.995e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.312e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.157e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.836e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.836e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.099e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.099e-11
Glyma.18G004900 hypothetical protein NA 1Chr18:384332–386910 (+)1.423e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)2.29e-12
Glyma.18G009100 hypothetical protein AT1G67620:AT1G67620:Lojap-related protein 1Chr18:662847–665921 (+)4.446e-11
Glyma.18G009200 hypothetical protein NA 1Chr18:667359–671598 (+)4.446e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.871e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.898e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.007e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.007e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.302e-12