Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49915

Metabolite ID
P49915
Deionized mass
425.2704 Da
Average m/z
426.2768
Average RT
26.5225
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
149
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

149 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.056e-11
Glyma.05G164700 hypothetical protein NA 3Chr05:35543931–35549196 (-)6.87e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.232e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.583e-14
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.138e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)4.492e-20
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 2Chr05:41022747–41030067 (-)2.697e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.245e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.852e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.832e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)1.936e-17
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)6.306e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.173e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.729e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.194e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.195e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.645e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.497e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.056e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)6.16e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)6.16e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)6.16e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.064e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.064e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.841e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.882e-12
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)7.217e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.181e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.41e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.121e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.884e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.371e-14
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)9.037e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.091e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.091e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.091e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.222e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.542e-18
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.498e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.121e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.091e-20
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.492e-20
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.437e-21
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.762e-20
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.762e-20
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.762e-20
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.983e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.479e-13
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)1.54e-12
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)1.54e-12
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)1.54e-12
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)1.847e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)7.59e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)7.59e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)7.59e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.091e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.529e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.789e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.789e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.789e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.82e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.82e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.549e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.549e-16
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)2.078e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.574e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.416e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.416e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.009e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.587e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.587e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)5.896e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)5.897e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.701e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.852e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.852e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.852e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.852e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)7.328e-12
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)2.889e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.591e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.169e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.162e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.736e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.38e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.38e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.38e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.38e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.407e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.37e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.898e-15
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.898e-15
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.898e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.041e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.041e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.224e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.936e-17
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.285e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.819e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.819e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.319e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.729e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.632e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.632e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.194e-13
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.454e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.42e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.419e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.419e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.707e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.645e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)7.403e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)7.264e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.845e-13
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.845e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.686e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.224e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.686e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.686e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.394e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.065e-14
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)9.925e-11
Glyma.15G152400 hypothetical protein NA 1Chr15:12641790–12646649 (+)9.925e-11
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)9.925e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)1.377e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.571e-13
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)3.526e-14
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.232e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.232e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.232e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.232e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.326e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.831e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.72e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.512e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.543e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)5.428e-11
Glyma.18G026200 hypothetical protein AT2G40150:TBL28:TRICHOME BIREFRINGENCE-LIKE 28__AT3G55990:ESK1:trichome birefringence-like protein (DUF828) 1Chr18:1953183–1957001 (-)3.848e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)1.297e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 1Chr18:47102746–47129707 (+)1.18e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)5.742e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)6.804e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.943e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.943e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.101e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.101e-14
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.892e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.316e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.469e-12