Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49852

Metabolite ID
P49852
Deionized mass
614.2394 Da
Average m/z
615.2469
Average RT
26.4632
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)8.718e-11
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)4.585e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 4Chr06:49451501–49461369 (-)1.815e-13
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)6.943e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.19e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.066e-16
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)6.82e-17
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)9.967e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.397e-14
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)1.08e-15
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.926e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.925e-15
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.63e-15
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)5.13e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.945e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.945e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.622e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.989e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.989e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.989e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.595e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.595e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)6.922e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.206e-13
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.206e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.161e-13
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)8.142e-14
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)9.195e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)9.67e-14
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.815e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.815e-13
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)4.216e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.397e-14
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)6.442e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.925e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.925e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.925e-15
Glyma.08G211300 hypothetical protein AT1G52630:AT1G52630:O-fucosyltransferase family protein 1Chr08:17059736–17062962 (+)9.515e-12
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)6.943e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)6.943e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)5.261e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)4.072e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)4.152e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.695e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.695e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.396e-12
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)8.299e-13
Glyma.15G107800 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr15:8473049–8483746 (+)5.235e-12
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)9.531e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)3.89e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.229e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.699e-14
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.972e-19
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)7.596e-14
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.493e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.19e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.066e-16
Glyma.19G148100 hypothetical protein AT2G42070:NUDX23:nudix hydrolase homolog 23 1Chr19:40872657–40877411 (+)5.497e-11
Glyma.19G149900 hypothetical protein AT2G41950:AT2G41950:DNA-directed RNA polymerase subunit beta 1Chr19:41010416–41013406 (-)2.053e-11
Glyma.19G150300 hypothetical protein AT5G06670:AT5G06670:P-loop containing nucleoside triphosphate hydrolases superfamily protein__AT3G12020:AT3G12020:P-loo… 1Chr19:41055800–41072245 (-)2.053e-11
Glyma.19G150600 hypothetical protein NA 1Chr19:41090888–41092634 (+)2.053e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)8.718e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.589e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.637e-12