P49645
Metabolite ID
P49645
Deionized mass
688.2600 Da
Average m/z
689.2620
Average RT
26.2503
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 7.758e-11 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 4.065e-12 | |
| Glyma.13G193900 | hypothetical protein | NA | 3 | Chr13:30714547–30714981 (-) | 8.519e-12 | |
| Glyma.16G196900 | hypothetical protein | NA | 3 | Chr16:35841279–35846894 (-) | 5.357e-12 | |
| Glyma.16G209300 | hypothetical protein | NA | 3 | Chr16:36856833–36863994 (-) | 8.181e-13 | |
| Glyma.07G021800 | hypothetical protein | AT1G80920:J8:Chaperone DnaJ-domain superfamily protein | 2 | Chr07:1697119–1698666 (+) | 2.247e-12 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 2 | Chr12:36289704–36295084 (-) | 8.427e-15 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 2.479e-15 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 9.994e-15 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 6.288e-15 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 6.288e-15 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 2 | Chr16:26324650–26336836 (+) | 7.174e-13 | |
| Glyma.16G144700 | hypothetical protein | AT5G66960:AT5G66960:Prolyl oligopeptidase family protein | 2 | Chr16:30514629–30519598 (+) | 3.296e-11 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 7.758e-11 | |
| Glyma.01G175500 | hypothetical protein | AT3G50660:DWF4:Cytochrome P450 superfamily protein | 1 | Chr01:51219681–51224948 (+) | 9.01e-11 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 4.413e-13 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 8.726e-12 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 2.602e-16 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 6.065e-14 | |
| Glyma.03G209700 | hypothetical protein | NA | 1 | Chr03:41646792–41648527 (+) | 8.634e-11 | |
| Glyma.05G034000 | hypothetical protein | AT4G03400:DFL2:Auxin-responsive GH3 family protein | 1 | Chr05:2965889–2971412 (-) | 1.975e-11 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 3.313e-12 | |
| Glyma.05G126400 | hypothetical protein | NA | 1 | Chr05:31961493–31968339 (+) | 2.939e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 2.512e-11 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 2.179e-11 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 2.179e-11 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 2.856e-12 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 6.068e-12 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 6.068e-12 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 6.068e-12 | |
| Glyma.05G137500 | hypothetical protein | NA | 1 | Chr05:33012282–33015297 (-) | 4.568e-11 | |
| Glyma.05G137600 | hypothetical protein | NA | 1 | Chr05:33018107–33020120 (-) | 4.947e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 3.512e-12 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 3.451e-12 | |
| Glyma.06G084800 | hypothetical protein | NA | 1 | Chr06:6515571–6517480 (-) | 3.732e-12 | |
| Glyma.06G085000 | hypothetical protein | NA | 1 | Chr06:6524339–6529016 (-) | 3.732e-12 | |
| Glyma.06G085100 | hypothetical protein | NA | 1 | Chr06:6531956–6537295 (-) | 3.732e-12 | |
| Glyma.06G085200 | hypothetical protein | NA | 1 | Chr06:6540849–6545557 (+) | 9.911e-13 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 3.643e-12 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 3.643e-12 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 3.643e-12 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 2.548e-12 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 2.548e-12 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 1.112e-14 | |
| Glyma.06G130900 | hypothetical protein | AT4G27800:TAP38:thylakoid-associated phosphatase 38 | 1 | Chr06:10753446–10757827 (+) | 6.548e-11 | |
| Glyma.06G292900 | hypothetical protein | AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) | 1 | Chr06:48170133–48173010 (-) | 2.069e-11 | |
| Glyma.06G313500 | hypothetical protein | NA | 1 | Chr06:50191600–50203098 (-) | 7.655e-12 | |
| Glyma.07G013400 | hypothetical protein | AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | 1 | Chr07:1028243–1033837 (-) | 1.031e-11 | |
| Glyma.07G013500 | hypothetical protein | NA | 1 | Chr07:1036819–1041984 (-) | 1.031e-11 | |
| Glyma.07G015700 | hypothetical protein | AT1G79750:NADP-ME4:NADP-malic enzyme 4 | 1 | Chr07:1244977–1251198 (-) | 7.752e-12 | |
| Glyma.07G017600 | hypothetical protein | NA | 1 | Chr07:1415837–1422680 (+) | 9.347e-15 | |
| Glyma.07G018100 | hypothetical protein | NA | 1 | Chr07:1442368–1445430 (-) | 1.688e-12 | |
| Glyma.07G018300 | hypothetical protein | AT3G27750:EMB3123:PPR containing protein | 1 | Chr07:1457706–1458428 (+) | 1.688e-12 | |
| Glyma.07G019900 | hypothetical protein | AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein | 1 | Chr07:1561952–1564494 (+) | 1.152e-15 | |
| Glyma.07G021100 | hypothetical protein | NA | 1 | Chr07:1647678–1650627 (+) | 5.677e-11 | |
| Glyma.07G021600 | hypothetical protein | AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | 1 | Chr07:1673827–1680014 (-) | 5.677e-11 | |
| Glyma.07G021700 | hypothetical protein | NA | 1 | Chr07:1684537–1692320 (+) | 2.727e-11 | |
| Glyma.07G070900 | hypothetical protein | AT1G31870:AT1G31870:pre-mRNA-splicing factor of RES complex protein | 1 | Chr07:6443135–6449037 (-) | 1.085e-11 | |
| Glyma.07G071000 | hypothetical protein | AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr07:6464646–6470484 (+) | 2.743e-11 | |
| Glyma.08G112600 | hypothetical protein | NA | 1 | Chr08:8660670–8663379 (-) | 1.202e-11 | |
| Glyma.08G112700 | hypothetical protein | NA | 1 | Chr08:8661027–8661191 (+) | 1.202e-11 | |
| Glyma.09G016500 | hypothetical protein | NA | 1 | Chr09:1274652–1276853 (-) | 9.019e-11 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 2.974e-11 | |
| Glyma.09G282900 | hypothetical protein | AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 | 1 | Chr09:49863377–49871270 (+) | 6.427e-11 | |
| Glyma.11G090300 | hypothetical protein | AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein | 1 | Chr11:6849007–6855564 (+) | 2.495e-11 | |
| Glyma.11G110300 | hypothetical protein | AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… | 1 | Chr11:8402144–8406496 (-) | 3.812e-11 | |
| Glyma.11G127100 | hypothetical protein | AT1G06040:STO:B-box zinc finger family protein | 1 | Chr11:9656242–9659517 (+) | 8.423e-11 | |
| Glyma.11G127200 | hypothetical protein | AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein | 1 | Chr11:9660434–9665570 (-) | 8.423e-11 | |
| Glyma.11G127300 | hypothetical protein | AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein | 1 | Chr11:9667918–9671917 (-) | 8.423e-11 | |
| Glyma.11G179000 | hypothetical protein | AT2G27230:LHW:transcription factor-like protein | 1 | Chr11:24412040–24417199 (+) | 9.271e-11 | |
| Glyma.11G182600 | hypothetical protein | AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein | 1 | Chr11:24998933–25003549 (-) | 2.706e-12 | |
| Glyma.11G182700 | hypothetical protein | AT1G32250:AT1G32250:Calcium-binding EF-hand family protein | 1 | Chr11:25028353–25031056 (-) | 9.778e-12 | |
| Glyma.12G096000 | hypothetical protein | AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein | 1 | Chr12:8080306–8088711 (-) | 5.848e-12 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 6.216e-14 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 6.216e-14 | |
| Glyma.12G183400 | hypothetical protein | NA | 1 | Chr12:34427496–34440319 (-) | 3.753e-11 | |
| Glyma.12G186200 | hypothetical protein | AT3G44350:NAC061:NAC domain containing protein 61 | 1 | Chr12:34708678–34710549 (+) | 2.069e-11 | |
| Glyma.12G198700 | hypothetical protein | AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein | 1 | Chr12:36001658–36004086 (+) | 4.361e-15 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 2.26e-15 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 2.26e-15 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 9.089e-16 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 9.994e-15 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 7.871e-13 | |
| Glyma.12G212800 | hypothetical protein | NA | 1 | Chr12:37179924–37185798 (-) | 9.387e-11 | |
| Glyma.13G049100 | hypothetical protein | NA | 1 | Chr13:14498952–14506408 (-) | 4.398e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 4.065e-12 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 8.794e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 1.573e-13 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 1.573e-13 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 6.288e-15 | |
| Glyma.13G185400 | hypothetical protein | NA | 1 | Chr13:29936606–29937420 (+) | 9.78e-11 | |
| Glyma.14G201600 | hypothetical protein | NA | 1 | Chr14:46703283–46706500 (+) | 1.425e-11 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 1.425e-11 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 1.007e-12 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 1.319e-12 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 1.007e-12 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 1.007e-12 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 3.552e-11 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.397e-12 | |
| Glyma.16G064100 | hypothetical protein | NA | 1 | Chr16:6322034–6325343 (-) | 9.745e-12 | |
| Glyma.16G066000 | hypothetical protein | AT5G40660:AT5G40660:ATP12 protein-like protein | 1 | Chr16:6570689–6574950 (+) | 1.286e-11 | |
| Glyma.16G117300 | hypothetical protein | NA | 1 | Chr16:26226934–26227350 (+) | 6.198e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 2.566e-13 | |
| Glyma.16G118200 | hypothetical protein | NA | 1 | Chr16:26337169–26338323 (+) | 1.041e-11 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 7.392e-12 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 4.049e-13 | |
| Glyma.16G121500 | hypothetical protein | NA | 1 | Chr16:27007186–27010856 (+) | 6.516e-12 | |
| Glyma.16G139500 | hypothetical protein | AT5G66550:AT5G66550:Maf-like protein | 1 | Chr16:29686243–29690410 (-) | 6.6e-12 | |
| Glyma.16G143400 | hypothetical protein | NA | 1 | Chr16:30337469–30338390 (-) | 2.288e-12 | |
| Glyma.16G144100 | hypothetical protein | NA | 1 | Chr16:30432951–30434052 (-) | 3.222e-11 | |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 5.125e-11 | |
| Glyma.16G196800 | hypothetical protein | AT5G07250:RBL3:RHOMBOID-like protein 3 | 1 | Chr16:35831912–35835153 (+) | 7.758e-11 | |
| Glyma.16G209400 | hypothetical protein | AT1G17840:ABCG11:white-brown complex-like protein | 1 | Chr16:36871978–36878151 (-) | 6.236e-11 | |
| Glyma.16G210300 | hypothetical protein | AT1G73340:AT1G73340:Cytochrome P450 superfamily protein | 1 | Chr16:36943073–36948828 (+) | 9.012e-12 | |
| Glyma.16G210400 | hypothetical protein | AT1G73350:AT1G73350:ankyrin repeat protein | 1 | Chr16:36949685–36953467 (+) | 9.012e-12 | |
| Glyma.17G064000 | hypothetical protein | AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein | 1 | Chr17:4924830–4930155 (-) | 4.061e-11 | |
| Glyma.17G064200 | hypothetical protein | AT5G57500:AT5G57500:Galactosyltransferase family protein | 1 | Chr17:4943412–4944357 (-) | 4.061e-11 | |
| Glyma.17G215500 | KNAT5 | NA | 1 | Chr17:36212363–36217688 (-) | 3.627e-12 | |
| Glyma.17G251200 | hypothetical protein | NA | 1 | Chr17:40605249–40607536 (+) | 7.283e-12 | |
| Glyma.17G251800 | hypothetical protein | NA | 1 | Chr17:40633579–40636068 (+) | 6.989e-11 | |
| Glyma.17G251900 | hypothetical protein | AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein | 1 | Chr17:40641019–40644794 (+) | 6.989e-11 | |
| Glyma.18G251900 | hypothetical protein | AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… | 1 | Chr18:53855786–53862322 (-) | 6.822e-11 | |
| Glyma.18G266500 | hypothetical protein | NA | 1 | Chr18:55088284–55091427 (-) | 9.203e-15 | |
| Glyma.19G005200 | hypothetical protein | AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein | 1 | Chr19:472201–476152 (-) | 5.163e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 3.768e-14 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 3.768e-14 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 8.396e-12 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 2.953e-13 | |
| Glyma.20G179600 | hypothetical protein | AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 | 1 | Chr20:41714740–41719977 (-) | 7.217e-11 |