Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49400

Metabolite ID
P49400
Deionized mass
471.7022 Da
Average m/z
472.7099
Average RT
26.1186
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
96
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

96 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.724e-15
Glyma.15G140700 hypothetical protein NA 3Chr15:11520847–11522863 (-)6.188e-12
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 2Chr03:4472672–4477787 (-)1.354e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.523e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)8.413e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)7.924e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.639e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)6.835e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.116e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.116e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.023e-11
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.811e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.345e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)8.657e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.798e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.798e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)3.56e-12
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)6.117e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.333e-15
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)3.786e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.598e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.105e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.658e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.744e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.744e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.744e-12
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)1.622e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.861e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.903e-17
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.66e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.106e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.678e-13
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)4.06e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)4.06e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.098e-18
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.098e-18
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.106e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.348e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)9.67e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.991e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.339e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.991e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.991e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.339e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)5.456e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.279e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.157e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.824e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.824e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.152e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.96e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.106e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.106e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.512e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.267e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.773e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.999e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.999e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.999e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.999e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.483e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.61e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.228e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.231e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.231e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.231e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.231e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.788e-15
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.31e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.268e-17
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.269e-17
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.316e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.07e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.724e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.755e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.344e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.344e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.116e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)8.994e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.329e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.023e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.828e-11
Glyma.15G140900 hypothetical protein AT3G66658:ALDH22A1:aldehyde dehydrogenase 22A1 1Chr15:11538070–11545857 (-)3.149e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.06e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.04e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.04e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.537e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.105e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.407e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)3.187e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)3.071e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.018e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.555e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.554e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.686e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.64e-11